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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 471118 |
Family | CBM22 |
Protein Properties | Length: 1064 Molecular Weight: 118682 Isoelectric Point: 4.9862 |
Chromosome | Chromosome/Scaffold: 1 Start: 3872024 End: 3876237 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 350 | 482 | 3.4e-29 |
IFLNSSFSDGLNHWSGRGCNLMLHESLADGKILPHSGTCFASATERTHKWSGIEQDITERVQRKLIYEASSVVRLSHSHHTVQATLYVQYLDQREEYIGI SSVQATHDDWVQLKGKFLLNGSPARAVVYIEGP | |||
CBM22 | 183 | 313 | 4.3e-31 |
NIIKNHDFSDGLFSWNANSCDSFVVSSNDCNLESYAVVNNRSDTWQGLEQDITDRVSPGYSYKVSASVSVSGPVFGSTQVMATLKLEHESSATEFQLIGK TCASKDIWKTLEGTFVVSKRPDRVVFFLEGP | |||
CBM22 | 5 | 144 | 2.9e-32 |
NIVMNGDFSVGIESWYPNGCEAFVVSSDPFSSEVMSAESSSCGYAVVTNRKETWQGLEQDITTRVSPGINYTVSACVGVSGPFHESPEVLATVRLEHEDS PSEYLFIGKTYASRDKWVDLEGTFSISNIPDRVVLYLEGP | |||
CBM22 | 517 | 661 | 4.7e-39 |
NIVSNSHLSDGTIEGWFPLGNCHLKVGDGSPRILPPLARDSLRTTHGYLSGRYVLATNRSGTWMGPAQMITDKVKLFLTYQVSAWVKIGSGGRTSPQDVN IALSVDGNWVNGGKVEVDDGDWHEVVGSFRIEKEAKEVMLHVQGP | |||
GH10 | 719 | 1003 | 0 |
QTHNSFPLGSCISRSNIDNEDFVDFFLNNFDWAVFGNELKWYWTEPEQGNFNYRDADEMLEFCDRYNIKTRGHCIFWEVESAIQPWVQQLSGSELEAAVE NRVTDLLTRYNGKFRHYDVNNEMLHGSFYRDRLGSDSRANMFKTAQELDPLATLFLNEYHIEDGFDSRSSPEKYIKLVHKLQKKGAPVGGIGIQGHITSP VGHIVRSALDKLSTLGLPIWFTELDVSSTNEHIRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREHSHLVNADGEVNEAGKRF |
Full Sequence |
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Protein Sequence Length: 1064 Download |
MADPNIVMNG DFSVGIESWY PNGCEAFVVS SDPFSSEVMS AESSSCGYAV VTNRKETWQG 60 LEQDITTRVS PGINYTVSAC VGVSGPFHES PEVLATVRLE HEDSPSEYLF IGKTYASRDK 120 WVDLEGTFSI SNIPDRVVLY LEGPAPGEDL LIRSVTVRSS TSTDFQETKE NKEASSVFPP 180 AFNIIKNHDF SDGLFSWNAN SCDSFVVSSN DCNLESYAVV NNRSDTWQGL EQDITDRVSP 240 GYSYKVSASV SVSGPVFGST QVMATLKLEH ESSATEFQLI GKTCASKDIW KTLEGTFVVS 300 KRPDRVVFFL EGPPPGIDLL IKSVTIHCES DNQFERSREF CSAPESDHHI FLNSSFSDGL 360 NHWSGRGCNL MLHESLADGK ILPHSGTCFA SATERTHKWS GIEQDITERV QRKLIYEASS 420 VVRLSHSHHT VQATLYVQYL DQREEYIGIS SVQATHDDWV QLKGKFLLNG SPARAVVYIE 480 GPPPGIDVFV DHFAVKPAEK DTPSRRPYIE SHAFGMNIVS NSHLSDGTIE GWFPLGNCHL 540 KVGDGSPRIL PPLARDSLRT THGYLSGRYV LATNRSGTWM GPAQMITDKV KLFLTYQVSA 600 WVKIGSGGRT SPQDVNIALS VDGNWVNGGK VEVDDGDWHE VVGSFRIEKE AKEVMLHVQG 660 PSPGVDLMVA GLQIFAVDRK SRLSYLRGQA DVVRKRNVSL KFSGLDPSEL SGATVKIRQT 720 HNSFPLGSCI SRSNIDNEDF VDFFLNNFDW AVFGNELKWY WTEPEQGNFN YRDADEMLEF 780 CDRYNIKTRG HCIFWEVESA IQPWVQQLSG SELEAAVENR VTDLLTRYNG KFRHYDVNNE 840 MLHGSFYRDR LGSDSRANMF KTAQELDPLA TLFLNEYHIE DGFDSRSSPE KYIKLVHKLQ 900 KKGAPVGGIG IQGHITSPVG HIVRSALDKL STLGLPIWFT ELDVSSTNEH IRGDDLEVML 960 WEAFAHPAVE GVMLWGFWEL FMSREHSHLV NADGEVNEAG KRFLEIKREW LSFVDGVMED 1020 EGGLEFRGYH GSYTVEVVTS ESKYVTNFVV DKGNSPIDVI IDL* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-19 | 183 | 315 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-19 | 5 | 146 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-35 | 712 | 977 | 293 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-75 | 722 | 1007 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-82 | 757 | 1003 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172476.1 | 0 | 1 | 1063 | 1 | 1063 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_176133.1 | 0 | 166 | 1063 | 12 | 914 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002301133.1 | 2e-33 | 2 | 339 | 332 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 4 | 502 | 163 | 667 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 5 | 1063 | 2 | 1049 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 3e-27 | 688 | 977 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 3e-27 | 688 | 977 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 1e-26 | 747 | 948 | 39 | 244 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 1e-26 | 747 | 948 | 39 | 244 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-26 | 747 | 948 | 39 | 244 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO850973 | 328 | 645 | 972 | 0 |
EB442796 | 300 | 545 | 844 | 0 |
EB442796 | 108 | 48 | 152 | 0.000001 |
EB442796 | 125 | 383 | 505 | 0.000002 |
EB442796 | 110 | 217 | 326 | 0.0006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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