y
Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 471466 |
Family | GH5 |
Protein Properties | Length: 553 Molecular Weight: 61492.2 Isoelectric Point: 7.8859 |
Chromosome | Chromosome/Scaffold: 1 Start: 5455404 End: 5458534 |
Description | Cellulase (glycosyl hydrolase family 5) protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH5 | 42 | 355 | 1.6e-41 |
IVDENGQRVKLMCANWPSHLQPVVAEGLSKQPADAVAKKIVEMGFNCVRLTWPLDLMTNETLANNVTVRQSFQSLGLNDDIVGFQTNNPSIIDLSLIEAY KMVVTTLGNNDVMVILDNHLTKPGWCCANDDGNGFFGDQFFDPTVWVAALKKMAATFDGVSNVVGMSLRNELRGPKQNVNDWFKYMQQGAEAVHSSNKKV LVILSGLSFDADLSFVRSRPVNLSFTGKLVFELHWYSFSDGNSWAANNPNDICGRVLNRIGNGGGYLLNQGFPLFLSEFGIDERGVNTNDNRYFGCVTGW AAENDVDWSLWALT |
Full Sequence |
---|
Protein Sequence Length: 553 Download |
MTSKEPKHMF CVFPFFCFFF SFIAQHTVPN MAYPLSTSSR WIVDENGQRV KLMCANWPSH 60 LQPVVAEGLS KQPADAVAKK IVEMGFNCVR LTWPLDLMTN ETLANNVTVR QSFQSLGLND 120 DIVGFQTNNP SIIDLSLIEA YKMVVTTLGN NDVMVILDNH LTKPGWCCAN DDGNGFFGDQ 180 FFDPTVWVAA LKKMAATFDG VSNVVGMSLR NELRGPKQNV NDWFKYMQQG AEAVHSSNKK 240 VLVILSGLSF DADLSFVRSR PVNLSFTGKL VFELHWYSFS DGNSWAANNP NDICGRVLNR 300 IGNGGGYLLN QGFPLFLSEF GIDERGVNTN DNRYFGCVTG WAAENDVDWS LWALTGSYYL 360 RQGVVGMIEY YGVLDSDWIS VRNSSFLQKI SFLQSPLQGP GPRIDAYNLV FHPLTGLCIV 420 RSLDDPKMLT LGPCNSSEPW SYTKKALRIK DQHLCLQSNG PKNPVTMTRT SCSTSGSKWQ 480 TISASRMHLS STTSNKTSLC LDVDTANNIV ANACKCLSKD SSCEPMSQWF KIIKATRPLK 540 SSRLHKEISS ML* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00458 | RICIN | 3.0e-8 | 411 | 514 | 113 | + Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication. | ||
cd00161 | RICIN | 2.0e-9 | 407 | 514 | 119 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
pfam00150 | Cellulase | 6.0e-15 | 43 | 356 | 328 | + Cellulase (glycosyl hydrolase family 5). |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD31066.1 | 0 | 31 | 552 | 1 | 522 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
RefSeq | NP_172772.2 | 0 | 1 | 552 | 1 | 552 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | NP_189245.1 | 0 | 31 | 537 | 1 | 508 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312657.1 | 0 | 32 | 552 | 9 | 529 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315653.1 | 0 | 31 | 544 | 1 | 513 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1vrx_B | 0.00000000000004 | 37 | 321 | 8 | 284 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
PDB | 1vrx_A | 0.00000000000004 | 37 | 321 | 8 | 284 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
PDB | 1ece_B | 0.0000000000004 | 37 | 321 | 8 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
PDB | 1ece_A | 0.0000000000004 | 37 | 321 | 8 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |