Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 471616 |
Family | PL1 |
Protein Properties | Length: 460 Molecular Weight: 51618.8 Isoelectric Point: 9.7538 |
Chromosome | Chromosome/Scaffold: 1 Start: 6060325 End: 6062300 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 174 | 372 | 0 |
IIFARSMIIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQYVNNVIIHNIYVKHIVPGNGGLIRDSEDHIGLRTKSDGDGISLFGATNIWIDHVSMTRC ADGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA |
Full Sequence |
---|
Protein Sequence Length: 460 Download |
MAAVFLNLGG YVFVFFSSFL AIVAPQVRAN VAVFDSYWTQ RQSDALKQTM GSYDPNPINV 60 TNHFNYHVNI AVDVSESNND TRRELTQVRS GRKTKKHSGK CLAYNPIDKC WRCDRNWAKN 120 RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DDDLINPKPG TLRHAVTRNG PLWIIFARSM 180 IIKLQQELMI TSDKTIDGRG ARVYIMEGAG LTLQYVNNVI IHNIYVKHIV PGNGGLIRDS 240 EDHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV 300 MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN 360 PTIISQGNRF IAPPNEQAKQ ITKREYTPYT EWKSWNWQSE GDYFLNGAYF VQSGKANAWS 420 SKPKNPLPNK FAIRPKPGTM VRKLTMDAGA LGCKQGKAC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-20 | 30 | 85 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-27 | 135 | 370 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-64 | 185 | 370 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-76 | 180 | 374 | 206 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB69759.1 | 0 | 1 | 459 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 22 | 459 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_172894.1 | 0 | 1 | 459 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_178375.1 | 0 | 5 | 459 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002520133.1 | 0 | 4 | 459 | 2 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 105 | 451 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 105 | 451 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-20 | 135 | 361 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-16 | 170 | 370 | 109 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 7e-16 | 183 | 450 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |