Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 471917 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 43615.7 Isoelectric Point: 8.5275 |
Chromosome | Chromosome/Scaffold: 1 Start: 7177261 End: 7179067 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 389 | 0 |
KDACTWNGPSKMYIPKGRFYLGGVTFGGPCNGKISFVIDGTLLAPPNNDDIKKETWINFRYIDYLTVSGGGTVDGQGKRSWSLNDCHKNNNCPKLAINMG FDFVKKSRMNGITSLNSKAGHLNFFSVDHFDITGVGLKAPGNSPNTDGIKIALSSNMQISNTHISTGDDCIAMLSGNTNFDIYNVTCGPGHGISIGSLGK NKDEKNVKGLTVRDSVFTGTTNGIRIKTWESSASTIVISNLVYKNLQMIDVESPINIDQKYCPYPPCNKLGDSHIQIQNVTLKNIWGTSRNKVAVKFQCS KSFPCKDVQLVDINLTHNGVDGPAIALCDNVEGS |
Full Sequence |
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Protein Sequence Length: 402 Download |
MECIDFVFMA FCLPLLFNAV TTSRPITGPK VFDVRRYGAK GDGKTDNTNA FTNAWKDACT 60 WNGPSKMYIP KGRFYLGGVT FGGPCNGKIS FVIDGTLLAP PNNDDIKKET WINFRYIDYL 120 TVSGGGTVDG QGKRSWSLND CHKNNNCPKL AINMGFDFVK KSRMNGITSL NSKAGHLNFF 180 SVDHFDITGV GLKAPGNSPN TDGIKIALSS NMQISNTHIS TGDDCIAMLS GNTNFDIYNV 240 TCGPGHGISI GSLGKNKDEK NVKGLTVRDS VFTGTTNGIR IKTWESSAST IVISNLVYKN 300 LQMIDVESPI NIDQKYCPYP PCNKLGDSHI QIQNVTLKNI WGTSRNKVAV KFQCSKSFPC 360 KDVQLVDINL THNGVDGPAI ALCDNVEGSA TGRIIPPHCL N* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-81 | 29 | 370 | 348 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-88 | 30 | 401 | 380 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-88 | 59 | 390 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 5.0e-89 | 10 | 401 | 395 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-120 | 6 | 399 | 400 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD50028.1 | 0 | 3 | 401 | 11 | 369 | AC007651_23 Similar to polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 3 | 401 | 4 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 1 | 401 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 401 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 401 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-19 | 120 | 391 | 72 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 120 | 391 | 72 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 120 | 391 | 72 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 120 | 391 | 72 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-19 | 120 | 391 | 72 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |