y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 472780 |
Family | AA7 |
Protein Properties | Length: 531 Molecular Weight: 59094 Isoelectric Point: 9.3459 |
Chromosome | Chromosome/Scaffold: 1 Start: 11351003 End: 11352655 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 79 | 524 | 0 |
AIVAAKHASHVQATVVCAKSNGIQLRIRSGGHDYEGLSYMSSVPFVILDMYNLRSITVDVSSKKAWVQAGATLGELYTKVNDVSQTLAFPAGVCATVGAG GHISGGGYGNLMRKYGITVDNVIDAQIVDVNGKLLNRLTMGEDLFWAIRGGGGGSFGVILSWKINLVEVPKIVTVFKVNKTLEQGGTDVLYKWQLVASKF PESLFVRAMPQVANGTKRGERTIAVVFYAQFLGRTDELMAIMNQNWPELGLKREDCQEMSWLNSTLFWADYPAGTPTSILLDRPSSPGDFFKSKSDYVKK PIPKEGLEKLWKTMLKFNNNIVWMQFNPYGGVMDRIPATATAFPHRKGNLFKIQYFTTWFNANATESSLSQMKELYEVAEPYVSSNPREAFFNYRDIDVG SNPSGETNVDEAKIYGYKYFLGNLKRLMDVKAKYDPENFFKNEQSI |
Full Sequence |
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Protein Sequence Length: 531 Download |
MKEALSVLCL VLVVSVLEAA VTKPKFEDFI GCLRYRTSPE NPITDAISIA DNTTAFLSSY 60 VSYTKNKRFL SPNYKKLLAI VAAKHASHVQ ATVVCAKSNG IQLRIRSGGH DYEGLSYMSS 120 VPFVILDMYN LRSITVDVSS KKAWVQAGAT LGELYTKVND VSQTLAFPAG VCATVGAGGH 180 ISGGGYGNLM RKYGITVDNV IDAQIVDVNG KLLNRLTMGE DLFWAIRGGG GGSFGVILSW 240 KINLVEVPKI VTVFKVNKTL EQGGTDVLYK WQLVASKFPE SLFVRAMPQV ANGTKRGERT 300 IAVVFYAQFL GRTDELMAIM NQNWPELGLK REDCQEMSWL NSTLFWADYP AGTPTSILLD 360 RPSSPGDFFK SKSDYVKKPI PKEGLEKLWK TMLKFNNNIV WMQFNPYGGV MDRIPATATA 420 FPHRKGNLFK IQYFTTWFNA NATESSLSQM KELYEVAEPY VSSNPREAFF NYRDIDVGSN 480 PSGETNVDEA KIYGYKYFLG NLKRLMDVKA KYDPENFFKN EQSIPPVRVM * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 1.0e-13 | 468 | 525 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 7.0e-16 | 78 | 527 | 475 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 7.0e-21 | 78 | 214 | 138 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK93677.1 | 0 | 18 | 530 | 18 | 530 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_173964.1 | 0 | 1 | 530 | 1 | 527 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_173966.1 | 0 | 1 | 530 | 1 | 528 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_564244.1 | 0 | 1 | 527 | 1 | 525 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_564245.1 | 0 | 18 | 530 | 18 | 530 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 27 | 527 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 27 | 527 | 9 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 27 | 527 | 9 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsh_A | 0 | 27 | 527 | 9 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 27 | 527 | 11 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |