| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 473472 |
| Family | GT5 |
| Protein Properties | Length: 611 Molecular Weight: 66949.5 Isoelectric Point: 8.5972 |
| Chromosome | Chromosome/Scaffold: 1 Start: 15176670 End: 15179949 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 86 | 582 | 0 |
| VIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYG PITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFSFDDYSLLNLPI SFKSSFDFMDGYEKPVKGRKINWMKAAILEADRVLTVSPYYAQELISGVDRGVELHTYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLI KEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRF EPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMKEMVKNCMDQDFSWKGPARLWEKVL | |||
| Full Sequence |
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| Protein Sequence Length: 611 Download |
| MATVTVSSHF VSRTSLFNNH GASSCSDLSQ ITLKGPSMTH CGLRSFNMLD KLQRRFQAKS 60 VSAKSSKGSS KVKTGGKIVC EKGMSVIFIG AEVGPWSKTG GLGDVLGGLP PALAARGHRV 120 MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG 180 SKIYGPITGV DYNDNQLRFS LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL 240 LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFSFDDYSL LNLPISFKSS FDFMDGYEKP 300 VKGRKINWMK AAILEADRVL TVSPYYAQEL ISGVDRGVEL HTYLRMKTVS GIINGMDVQE 360 WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD VPVIGFIGRL EEQKGSDILV 420 EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII 480 VPSRFEPCGL IQLHAMRYGT VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA 540 TAKAVTRAVA VYGTSAMKEM VKNCMDQDFS WKGPARLWEK VLLSLNVVGS EAGIESEEIA 600 PLAKENVATP * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-84 | 180 | 585 | 413 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 1.0e-99 | 84 | 575 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 4.0e-126 | 84 | 576 | 503 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 2.0e-164 | 84 | 585 | 508 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-167 | 86 | 582 | 509 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ11751.1 | 0 | 1 | 610 | 1 | 609 | granule bound starch synthase [Gossypium hirsutum] |
| GenBank | ACV72639.1 | 0 | 1 | 610 | 1 | 609 | granule-bound starch synthase 1 [Gossypium hirsutum] |
| RefSeq | NP_174566.1 | 0 | 1 | 610 | 1 | 610 | starch synthase, putative [Arabidopsis thaliana] |
| Swiss-Prot | Q00775 | 0 | 1 | 610 | 1 | 607 | SSG1_SOLTU RecName: Full=Granule-bound starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase I; Short=GBSS-I; Flags: Precursor |
| RefSeq | XP_002300507.1 | 0 | 1 | 610 | 1 | 610 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 84 | 610 | 10 | 536 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3vue_A | 0 | 84 | 610 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 84 | 585 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 84 | 587 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 84 | 587 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| AJ568414 | 611 | 1 | 611 | 0 |
| CN831271 | 382 | 230 | 611 | 0 |
| HO825853 | 518 | 92 | 609 | 0 |
| HO629148 | 537 | 78 | 611 | 0 |
| HO778340 | 376 | 78 | 451 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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