| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 474038 |
| Family | CBM49 |
| Protein Properties | Length: 628 Molecular Weight: 69515.4 Isoelectric Point: 9.0983 |
| Chromosome | Chromosome/Scaffold: 1 Start: 25006701 End: 25009883 |
| Description | glycosyl hydrolase 9C1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM49 | 535 | 614 | 2.3e-32 |
| IEFLHSITTNWMAGNTRYYRHKVIIKNNSQKPISDLKLKIEDLSGPIWGLNPTGQKYTYQLPQWQKTLRPGQAYDFVYVQ | |||
| GH9 | 30 | 491 | 0 |
| NYGNALDKTFLFFEAQRSGKLPAAQRVKWRSHSGLKDGLAQGVSLEGGYYDAGDHVKFGLPMAFAVTMLSWAAVDNRKELSSSNQMQQTLWSIRWGTDYF IKAHPQPNVLWGQVGDGESDHYCWERPEDMTTSRTAYKLDQYHPGSDLAGETAAALAAASLAFKPFNSSYSALLLTHAKELFSFADKYRGLYTDSIPNAK AFYMSSGYSDELLWAAAWLHRATGDQYYLKYAMDNSGYMGGTGWGMKEFSWDNKYAGVQILLSKILLEGKGGVYTSTLKQYQTKADYFACACLKKNGGYN IQTTPGGLMYVREWNNLQYASAAAYLLAIYSDYLSAANAKLNCPDGLVQPQALLDFARSQADYILGKNRQGMSYVVGYGPKYPIHVHHRGASIPSIFVQR SFVSCVQGFDSWYRRSQADPNVIYGALVGGPDENDNYSDDRSNYEQSEPTLSGTAPLVGLFA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 628 Download |
| MRKYGGSLFG LSLLLTVLLA AATAAAEYYN YGNALDKTFL FFEAQRSGKL PAAQRVKWRS 60 HSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW AAVDNRKELS SSNQMQQTLW 120 SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDQ YHPGSDLAGE 180 TAAALAAASL AFKPFNSSYS ALLLTHAKEL FSFADKYRGL YTDSIPNAKA FYMSSGYSDE 240 LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGMKEFSW DNKYAGVQIL LSKILLEGKG 300 GVYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAIYS 360 DYLSAANAKL NCPDGLVQPQ ALLDFARSQA DYILGKNRQG MSYVVGYGPK YPIHVHHRGA 420 SIPSIFVQRS FVSCVQGFDS WYRRSQADPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL 480 SGTAPLVGLF AKLYGGNLGS YGGGSYKPYV TTKPPVISYK ATPTTYSPKQ SGAQIEFLHS 540 ITTNWMAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK 600 TLRPGQAYDF VYVQGGPQAK VSVLSYN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00759 | Glyco_hydro_9 | 4.0e-178 | 37 | 491 | 457 | + Glycosyl hydrolase family 9. | ||
| PLN02340 | PLN02340 | 0 | 36 | 627 | 592 | + endoglucanase | ||
| PLN02171 | PLN02171 | 0 | 37 | 626 | 595 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 37 | 492 | 458 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 37 | 492 | 456 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG29742.1 | 0 | 1 | 627 | 1 | 623 | AC084414_10 endo-beta-1,4-glucanase, putative [Arabidopsis thaliana] |
| EMBL | CBI27137.1 | 0 | 11 | 627 | 11 | 615 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175323.1 | 0 | 1 | 627 | 1 | 627 | AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002310080.1 | 0 | 26 | 627 | 23 | 611 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| RefSeq | XP_002527135.1 | 0 | 9 | 627 | 6 | 620 | endo-1,4-beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 1ksc_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 1ks8_A | 0 | 29 | 477 | 3 | 412 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 29 | 494 | 24 | 460 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 29 | 515 | 4 | 458 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
