Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 474834 |
Family | GH28 |
Protein Properties | Length: 435 Molecular Weight: 47315.6 Isoelectric Point: 6.4852 |
Chromosome | Chromosome/Scaffold: 1 Start: 32774106 End: 32775975 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 414 | 0 |
TGSKSALLLVPYTFCFLVKPTTFNGPCRTQLVLQIDGFILSPDGPGSWPSNYQRQWMMFYRVNGLSIQGSGVINGRGQKWWNLPCKPHKGINGTTQPGPC DSPVTIRVFQSSKVRIQGLNFMNSAQFHVRFDNCSDVVVDSVTIKAPASSPNTDGIHIENTHNVQIHNSVISNGDDCISIGGGCFNVDIQNVTCGPSHGI SIGSLGLHNSQAYVSNITVTNSTIWNSDNGVRIKTWQGGSGSVSRIVFSNILMVNVRNPIMIDQYYCQTNNCANQTSAVIIRDVLYANIKGTYDLRSPPM HFGCSDSVPCTNLRLADVDLFPSKGQHLENPFCWNAY |
Full Sequence |
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Protein Sequence Length: 435 Download |
MALPNSLFYT IFFILFSSIP IAHNMYLSPS PAPNPAYDDN DSIGPTVFDV TSFGAIGDCA 60 TDDTSAFKMA WDVACMSTGS KSALLLVPYT FCFLVKPTTF NGPCRTQLVL QIDGFILSPD 120 GPGSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGING TTQPGPCDSP 180 VTIRVFQSSK VRIQGLNFMN SAQFHVRFDN CSDVVVDSVT IKAPASSPNT DGIHIENTHN 240 VQIHNSVISN GDDCISIGGG CFNVDIQNVT CGPSHGISIG SLGLHNSQAY VSNITVTNST 300 IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIIRD 360 VLYANIKGTY DLRSPPMHFG CSDSVPCTNL RLADVDLFPS KGQHLENPFC WNAYGSTQIT 420 VPPVYCLLDA PPDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-82 | 48 | 431 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-83 | 14 | 422 | 419 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-89 | 77 | 397 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-97 | 45 | 423 | 384 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-128 | 47 | 429 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176064.1 | 0 | 1 | 434 | 1 | 434 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002276945.1 | 0 | 27 | 430 | 46 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 26 | 434 | 56 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 47 | 434 | 21 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 47 | 434 | 74 | 461 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 8e-24 | 49 | 429 | 22 | 362 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 4e-22 | 149 | 401 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-22 | 149 | 401 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-22 | 149 | 401 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-22 | 149 | 401 | 79 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |