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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 475392 |
Family | CBM22 |
Protein Properties | Length: 918 Molecular Weight: 102277 Isoelectric Point: 5.7133 |
Chromosome | Chromosome/Scaffold: 2 Start: 4169343 End: 4187181 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 29 | 168 | 1.6e-32 |
NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGVLDPSKCGTYVAVTNRKETWQGLEQDITSRVKPCCPYKVSATVAVSGPVQGLVEVMATLKLEDRQS QTNYQFIAKACVFKEKWVTLEGMFSLPSITEKVVFYLEGP | |||
CBM22 | 199 | 334 | 3.5e-33 |
IVVNPNFEDGLTNWSGRSCKIVLHDSMADGKIVPESGKVFASATERTQNWNGIQQEITGKVQRKRAYEATAVVRIYGNNVTTATVQATLWVQNPNQRDQY IGISTVQATDKEWVHLKGKFLLNGSASRVVIYVEGP | |||
CBM22 | 369 | 511 | 2.29999e-40 |
NILTNSHLSDDTTNGWFPLGNCTLSVAEGSPRILPPMARDSLGPREPLSGRYILATNRTQTWMGPAQMITDKLKLFLTYQISVWVKVGYGINSPQNVNVA LGIDGQWVNGGQVEINNDRWHEVGGSFRIEKQPSKALVYVQGP | |||
GH10 | 571 | 844 | 0 |
RNSFPVGTCISRSNIDNEDFVDFFLKNFNWAVFANELKWYWTEPEQGKLNYQDADDMLNLCSSNNIETRGHCIFWEVQATVQQWIQNMNQTDLNNAVQNR LTDLLNRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRVNMFKTAHQLDPSATLFVNDYHVEDGCDPKSCPEKYTELILDLQEKGAPVGGIGIQGHIDSPVG PIVCSALDKLGILGLPIWFTETDVSSVNEHIRADDLEVMMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEG |
Full Sequence |
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Protein Sequence Length: 918 Download |
MEISRKDNEE PEKQNNNNVA SIIGSDRTNV IVNHDFSSGM HSWHPNCCEA FVVTAESNVS 60 HGVLDPSKCG TYVAVTNRKE TWQGLEQDIT SRVKPCCPYK VSATVAVSGP VQGLVEVMAT 120 LKLEDRQSQT NYQFIAKACV FKEKWVTLEG MFSLPSITEK VVFYLEGPSP GIDLLIQSVT 180 IHSESELELD RVTAEDETIV VNPNFEDGLT NWSGRSCKIV LHDSMADGKI VPESGKVFAS 240 ATERTQNWNG IQQEITGKVQ RKRAYEATAV VRIYGNNVTT ATVQATLWVQ NPNQRDQYIG 300 ISTVQATDKE WVHLKGKFLL NGSASRVVIY VEGPPPGTDI LLNSFTVKHA EKIPPSPPPS 360 IENPAFGVNI LTNSHLSDDT TNGWFPLGNC TLSVAEGSPR ILPPMARDSL GPREPLSGRY 420 ILATNRTQTW MGPAQMITDK LKLFLTYQIS VWVKVGYGIN SPQNVNVALG IDGQWVNGGQ 480 VEINNDRWHE VGGSFRIEKQ PSKALVYVQG PSSGIDLMVA GLQIFPVDRL ARIKHLKRQC 540 DKIRKRDVIL KFSGVDSSKL SGATVIVRQI RNSFPVGTCI SRSNIDNEDF VDFFLKNFNW 600 AVFANELKWY WTEPEQGKLN YQDADDMLNL CSSNNIETRG HCIFWEVQAT VQQWIQNMNQ 660 TDLNNAVQNR LTDLLNRYKG KFKHYDVNNE MLHGSFYQDK LGKDIRVNMF KTAHQLDPSA 720 TLFVNDYHVE DGCDPKSCPE KYTELILDLQ EKGAPVGGIG IQGHIDSPVG PIVCSALDKL 780 GILGLPIWFT ETDVSSVNEH IRADDLEVMM WEAFGHPAVE GIMLWGFWEL FMSRDNSHLV 840 NAEGDVNEAG KRFLAVKKDW LSHANGHVDQ NGAFPFRGYN GNYAVEVITT SSTKVLKTFV 900 VEKEDSSQVI TVDLQGL* 960 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-15 | 29 | 170 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 3.0e-17 | 368 | 513 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-31 | 549 | 827 | 301 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-79 | 570 | 857 | 308 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-80 | 607 | 853 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG50641.1 | 0 | 1 | 917 | 1 | 915 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
RefSeq | NP_176133.1 | 0 | 1 | 917 | 1 | 917 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002301133.1 | 0 | 25 | 914 | 160 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 29 | 531 | 2 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 197 | 524 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 9e-28 | 576 | 827 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 9e-28 | 576 | 827 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-27 | 597 | 826 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-27 | 597 | 826 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 6e-27 | 597 | 795 | 39 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EB442796 | 298 | 397 | 694 | 0 |
EL428755 | 280 | 574 | 853 | 0 |
EX570690 | 295 | 620 | 914 | 0 |
EB442796 | 116 | 232 | 347 | 0.0000007 |
EB442796 | 113 | 69 | 181 | 0.000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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