Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 475879 |
Family | PL1 |
Protein Properties | Length: 409 Molecular Weight: 44900.9 Isoelectric Point: 8.4263 |
Chromosome | Chromosome/Scaffold: 2 Start: 12707735 End: 12709662 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 123 | 327 | 0 |
QDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITIQYVTNIIIHGLNIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDH CSLSNCDDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQG NRFLA |
Full Sequence |
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Protein Sequence Length: 409 Download |
MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SDPELVVQEV NEKINASRRN LGVLSCGTGN 60 PIDDCWRCNP KWEKNRQQLA DCAIGFGKHA IGGRDGKIYV VTDSSDKDVV NPKPGTLRHA 120 VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITIQY VTNIIIHGLN 180 IHDCKRKGNA YVRDSPSHYG WRTASDGDAV SIFGGSHVWV DHCSLSNCDD GLIDAIHGST 240 AITISNNYLT HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300 DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPQSKWKKW NWRSEGDLFL 360 NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL FCRKGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-72 | 140 | 325 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-81 | 134 | 329 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG28907.1 | 0 | 35 | 408 | 19 | 392 | AC008113_23 F12A21.12 [Arabidopsis thaliana] |
GenBank | AAM67091.1 | 0 | 3 | 408 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN76500.1 | 0 | 22 | 408 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 22 | 408 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_564906.1 | 0 | 1 | 408 | 1 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 400 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 400 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 129 | 327 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000001 | 189 | 399 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000001 | 189 | 399 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |