| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 477043 |
| Family | GT4 |
| Protein Properties | Length: 406 Molecular Weight: 45312.2 Isoelectric Point: 7.515 |
| Chromosome | Chromosome/Scaffold: 2 Start: 18353765 End: 18356111 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 212 | 371 | 3.09967e-42 |
| FLSINRFERKKNIDLAVSAFAMLCKHKQNLSDVTLTVAGKCGYDERLKENVEYLEELRSLAEKEGVFDRVNFITSCSTAERNELLSSCLCVLYTPTDEHF GIVPLEAMAAYKPVIACNSGGPVETVKNGVTGYLCEPTPEDFSSAMARFIENPELANRMG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 406 Download |
| MGKKEGSKMN IAIIHPDLGI GGAERLIVDA AVELASHGHK VHVFTSHHDK SRCFEETLSG 60 IFRVTVYGSF LPRHIFYRLH AVCAYLRCLF VALCVLLGWS SFDVILADQV SVVVPLLKLK 120 RSSKVVFYCH FPDLLLAKHT TALRRMYRKP IDFIEEQTTG MADMILVNSN FTASTFASTF 180 KRLNAQGNRP AVLYPAVNID QFNESHTYKL NFLSINRFER KKNIDLAVSA FAMLCKHKQN 240 LSDVTLTVAG KCGYDERLKE NVEYLEELRS LAEKEGVFDR VNFITSCSTA ERNELLSSCL 300 CVLYTPTDEH FGIVPLEAMA AYKPVIACNS GGPVETVKNG VTGYLCEPTP EDFSSAMARF 360 IENPELANRM GAEARNHVVE SFSVKTFGQK LNQYLVDVVS SPKED* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03804 | GT1_wbaZ_like | 1.0e-36 | 11 | 391 | 396 | + This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. | ||
| cd03798 | GT1_wlbH_like | 3.0e-40 | 11 | 391 | 401 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| COG0438 | RfaG | 1.0e-43 | 8 | 400 | 402 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| cd03801 | GT1_YqgM_like | 9.0e-54 | 10 | 391 | 397 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| cd03805 | GT1_ALG2_like | 0 | 9 | 391 | 396 | + This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC83030.1 | 0 | 1 | 405 | 1 | 405 | Similar to gene pi010 glycosyltransferase gi |
| GenBank | AAM26674.1 | 0 | 1 | 405 | 1 | 403 | At1g78800/F9K20_16 [Arabidopsis thaliana] |
| GenBank | ACU21459.1 | 0 | 1 | 405 | 1 | 407 | unknown [Glycine max] |
| RefSeq | NP_178001.2 | 0 | 1 | 405 | 1 | 403 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
| RefSeq | XP_002525620.1 | 0 | 1 | 405 | 1 | 408 | alpha-1,3-mannosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2f9f_A | 3e-17 | 212 | 365 | 26 | 164 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
| PDB | 3c48_B | 0.00000000002 | 6 | 405 | 18 | 432 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 3c48_A | 0.00000000002 | 6 | 405 | 18 | 432 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 3c4v_B | 0.0000000002 | 21 | 405 | 22 | 412 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 3c4v_A | 0.0000000002 | 21 | 405 | 22 | 412 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
