| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 477115 |
| Family | CBM43 |
| Protein Properties | Length: 387 Molecular Weight: 40347 Isoelectric Point: 4.5958 |
| Chromosome | Chromosome/Scaffold: 2 Start: 18685478 End: 18687355 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 300 | 381 | 3.1e-32 |
| WCVAKPSVPDPIIQEAMNFACGSGADCHPIQPNGPCFKPNTLWAHASFAFNSYWQRTKGTGGSCTFGGTGMLVTVDPSFNGC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MASNRAFATI CLLLCVILST NFLTHCVVDA RKSEGFERQP KEVMMIKALK HTSLLEKMLT 60 QLNLAQPLDY SSSSNTQPYG VSTTLTLPPY VSLPPLSVPG NAPPFCVNPP LTPPSTSYPG 120 LSPPPGPITL PNPPDSSSNP NSNPNPPESS SNPNPPESSS NPNSNPKPPE SSSNPNPPDS 180 SSNPNPPESS SNPNPPVTGP NPPESSSNPN PPESSSNPNP PITIPYPPES SSPNPPETVP 240 SPPESGYTPG PILGPPYSEP GPSTPTGSIP SPSSGFLPPI VYPPPMAPPS PSVTPTSAYW 300 CVAKPSVPDP IIQEAMNFAC GSGADCHPIQ PNGPCFKPNT LWAHASFAFN SYWQRTKGTG 360 GSCTFGGTGM LVTVDPSFNG CHFDFF* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 6.0e-18 | 300 | 355 | 61 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-31 | 300 | 383 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD30228.1 | 0 | 45 | 377 | 1 | 344 | AC007202_10 T8K14.10 [Arabidopsis thaliana] |
| RefSeq | NP_001117621.1 | 0 | 1 | 386 | 1 | 396 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_178066.2 | 0 | 1 | 386 | 1 | 397 | unknown protein [Arabidopsis thaliana] |
| RefSeq | XP_002264966.1 | 0 | 12 | 386 | 8 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312230.1 | 0 | 73 | 377 | 3 | 292 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 8e-19 | 300 | 383 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
