Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 477239 |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 48136.6 Isoelectric Point: 8.2387 |
Chromosome | Chromosome/Scaffold: 2 Start: 19134530 End: 19136707 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 410 | 0 |
KTACSSKVKTRILVPENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDAWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWTRSCKHNHSNPCRGA PTAITFHKCKNMRVENLNVIDSQQMHIAFTSCRRVAISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCVSIVKNSSQISISNIICGPGHGISI GSLGKSESWEEVRDITVDTAFISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSALSVENISFVYVRGTSATKQAIKI SCSDSSPCRNILLQDVDLEPSSGDGFTESFCWEA |
Full Sequence |
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Protein Sequence Length: 445 Download |
MSYSCGTTVV VTLLLLVVAS SLALTANADS FESLLQLPRR QSRSTRPRSE RLLHVGKFGA 60 KGNGFTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP IDLSGPCKAR LTLQISGTII 120 APNDPDAWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WTRSCKHNHS NPCRGAPTAI 180 TFHKCKNMRV ENLNVIDSQQ MHIAFTSCRR VAISGLKVIA PATSPNTDGI HISVSRGIVI 240 DNTTVSTGDD CVSIVKNSSQ ISISNIICGP GHGISIGSLG KSESWEEVRD ITVDTAFISD 300 TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSALSVENIS 360 FVYVRGTSAT KQAIKISCSD SSPCRNILLQ DVDLEPSSGD GFTESFCWEA YGSSSGQVYP 420 PPCLSDDTSF LEQSVQSGIT SAYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-85 | 54 | 430 | 380 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-93 | 52 | 423 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-95 | 80 | 395 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-108 | 55 | 395 | 343 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 52 | 444 | 393 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55489.1 | 0 | 1 | 444 | 1 | 459 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
GenBank | ABM67700.1 | 0 | 1 | 439 | 4 | 440 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 1 | 444 | 1 | 444 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 31 | 443 | 30 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 30 | 437 | 11 | 418 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 147 | 398 | 113 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 2e-20 | 143 | 382 | 69 | 320 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 4e-20 | 145 | 394 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-20 | 145 | 394 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-20 | 145 | 394 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |