| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 477411 |
| Family | GT5 |
| Protein Properties | Length: 797 Molecular Weight: 88170.6 Isoelectric Point: 6.7653 |
| Chromosome | Chromosome/Scaffold: 3 Start: 361834 End: 365405 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 306 | 789 | 0 |
| NVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDMEVMYFHAYIDGVDFVFIDSPVFRHLSNNIYGGNRL DILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPNHYLDSFKLYDPV GGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINENDWKFRGIVNGIDTQEWNPKFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLP VRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGSGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAM NYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 797 Download |
| MASVAESSFP LLCQIKTQRR VVTSSTLRNS SLVRVSYPEL PSGSLSFRCR SFVYGHRWKC 60 VRRVEATGSD SSESASGGDE PEDALQATIE KSKKVLAMQR NLLQQIAERR KLVSSIKEST 120 PNLDDGKASS KEEYGSSVIA NTDATKKETM DGDGNRSVSP SSYGKSSLNK EPEAKSLSPS 180 TESLKNSKQS SASVTSPEKP SDVAANGKPW SSVVASSLDP PYKPSSVVTS PEKTSPEKPS 240 KSRAGAFWSD PLPSYLTKAP ETSSMKTEEY VETREEKTPE VASSETNEPG KDEEKPPPLA 300 GANVMNVILV AAECAPFSKT GGLGDVAGAL PKALARRGHR VMVVVPRYAE YAEAKDLGVR 360 KRYKVAGQDM EVMYFHAYID GVDFVFIDSP VFRHLSNNIY GGNRLDILKR MVLFCKAAVE 420 VPWYVPCGGV CYGDGNLAFI ANDWHTALLP VYLKAYYRDH GIMKYTRSVL VIHNIAHQGR 480 GPVDDFSYVD LPNHYLDSFK LYDPVGGEHF NIFAAGLKAA DRVLTVSHGY SWEVKTLEGG 540 WGLHNIINEN DWKFRGIVNG IDTQEWNPKF DTYLHSDDYT NYSLENLHIG KPQCKAALQK 600 ELGLPVRPDV PLIGFIGRLD HQKGVDLIAE AVPWMMSQDV QLVMLGSGRP DLEEVLRQME 660 HQYRDKARGW VGFSVKTAHR ITAGADILLM PSRFEPCGLN QLYAMNYGTI PVVHAVGGLR 720 DTVQQFDPYS ETGLGWTFDS AEAGKLIHAL GNCLLTYREY KESWEGLQRR GMTQDLSWDN 780 AAEKYEEVLV AAKYHW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 5.0e-86 | 305 | 793 | 516 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 7.0e-137 | 305 | 787 | 498 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-172 | 305 | 788 | 494 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 305 | 792 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 306 | 789 | 495 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV25894.1 | 0 | 8 | 796 | 6 | 751 | starch synthase isoform II [Manihot esculenta] |
| GenBank | ACL98480.1 | 0 | 25 | 796 | 37 | 774 | starch synthase IIa-2 precursor [Glycine max] |
| RefSeq | NP_186767.1 | 0 | 1 | 796 | 1 | 792 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002278470.1 | 0 | 62 | 796 | 70 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002531856.1 | 0 | 1 | 796 | 1 | 754 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 305 | 790 | 10 | 509 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 3vue_A | 0 | 305 | 790 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 305 | 788 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 305 | 788 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 305 | 788 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 479 | 797 | 0 |
| HO777841 | 403 | 87 | 487 | 0 |
| HO781048 | 393 | 405 | 797 | 0 |
| HO445868 | 438 | 360 | 797 | 0 |
| HO781048 | 38 | 367 | 404 | 0.006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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