Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 477994 |
Family | GH28 |
Protein Properties | Length: 447 Molecular Weight: 47933.1 Isoelectric Point: 6.5625 |
Chromosome | Chromosome/Scaffold: 3 Start: 2831798 End: 2834073 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 420 | 0 |
GGAQLYVPPGNWLTGSFSLTSHLTLFLENGAVIVASQDPSHWEVVDPLPSYGRGTDLPGKRYKSLINGNMLHDVVVTGDNGTIDGQGLVWWDRFTSHSLK YNRPHLIEFLSSKNVIVSNLTFLNAPAYTIHSIYSSHVYIHKILAHSSPESPYTIGIVPDSSNYVCIQNSTINVGYDAISLKSGWDEYGIAYSRPTENVH IRNVYLRGASGSSISFGSEMSGGISDVVVDNAHMHNSLTGIAFRTTKGRGGYIKEIDISNIDMSRIGTAIVANGSFGSHPDDKYDANALPLVSHIRLSNI SGENIGIAGKLFGIKESPFSAVALSNIALSTSSGSSVSWQCSYVY |
Full Sequence |
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Protein Sequence Length: 447 Download |
MSVVIILILA LTSLIPIYAK VLGAGKICDE LGRISLSTRP HSVSITDFGA VGDGKTLNTL 60 AFQNAVFYLM SFADKGGAQL YVPPGNWLTG SFSLTSHLTL FLENGAVIVA SQDPSHWEVV 120 DPLPSYGRGT DLPGKRYKSL INGNMLHDVV VTGDNGTIDG QGLVWWDRFT SHSLKYNRPH 180 LIEFLSSKNV IVSNLTFLNA PAYTIHSIYS SHVYIHKILA HSSPESPYTI GIVPDSSNYV 240 CIQNSTINVG YDAISLKSGW DEYGIAYSRP TENVHIRNVY LRGASGSSIS FGSEMSGGIS 300 DVVVDNAHMH NSLTGIAFRT TKGRGGYIKE IDISNIDMSR IGTAIVANGS FGSHPDDKYD 360 ANALPLVSHI RLSNISGENI GIAGKLFGIK ESPFSAVALS NIALSTSSGS SVSWQCSYVY 420 GSSESVIPEP CPELKRDDDA YGRAAV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-18 | 33 | 377 | 358 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-19 | 34 | 437 | 413 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 4.0e-19 | 33 | 431 | 425 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-20 | 148 | 419 | 279 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-33 | 43 | 355 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65366.1 | 0 | 70 | 446 | 1 | 377 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001032043.1 | 0 | 15 | 444 | 15 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566292.1 | 0 | 70 | 446 | 1 | 377 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_680409.1 | 0 | 15 | 444 | 17 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_850525.1 | 0 | 1 | 446 | 1 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-29 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-29 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-29 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-29 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-17 | 87 | 419 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |