y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 478021 |
Family | PL1 |
Protein Properties | Length: 417 Molecular Weight: 46252.2 Isoelectric Point: 8.417 |
Chromosome | Chromosome/Scaffold: 3 Start: 2945960 End: 2950419 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 130 | 335 | 0 |
IQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHIHDCVPTGNAMVRSSPSHYGFRSMADGDAISIFGSSHIWID HNSLSNCADGLVDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 417 Download |
MAVTKLILFA SALLLTTLFI GVNSSRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG 60 YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG GRDGRFYVVT DPGDDNPVNP 120 IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT 180 NIIVHGIHIH DCVPTGNAMV RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL 240 VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH 300 GYFHVVNNDY THWEMYAIGG SASPTINSQG NRFLAPTNPF AKEVTKREYT GESKWKHWNW 360 RSEGDLFLNG AFFTRSGAGA GSNYARASSL SAKSSSLVGT MTSYSGALNC RAGRRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-28 | 155 | 339 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-70 | 148 | 333 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-79 | 142 | 336 | 206 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 68 | 408 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 68 | 408 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-19 | 137 | 335 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 158 | 333 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3krg_A | 0.00000000002 | 158 | 345 | 130 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |