Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 478120 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 41698.5 Isoelectric Point: 7.5406 |
Chromosome | Chromosome/Scaffold: 3 Start: 3277542 End: 3279162 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 376 | 0 |
TSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNSAWRVNNCHKTFNCKKLPISIRF DFVLNSEIRDISSIDAKNFHINVLGAKNMTMDNIKIIAPEESPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRY GHEQDVSGIKIINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIVKNVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSK GYPCQNVEIGDIDIKYNGADGPATFQCSNVSPK |
Full Sequence |
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Protein Sequence Length: 392 Download |
MGAYFGVSTI LIICLLGISA NAEVFTIGSS SGSDITQALL KAFTSACQSS SPSKVVIPKG 60 EFKLGEIEMR GPCKAPIEVT LQGTVKADGN AIQGKEKWVV FGNIDGFKLN GGGAFDGEGN 120 SAWRVNNCHK TFNCKKLPIS IRFDFVLNSE IRDISSIDAK NFHINVLGAK NMTMDNIKII 180 APEESPNTDG IHLGRSDGVK ILNSFISTGD DCISVGDGMK NLHVEKVTCG PGHGISVGSL 240 GRYGHEQDVS GIKIINCTLQ ETDNGLRIKT WPSAACSTTA SDIHFEDIIV KNVSNPILID 300 QEYCPWNQCN KQKASTIKLV NISFKNIRGT SGNKDAVKLL CSKGYPCQNV EIGDIDIKYN 360 GADGPATFQC SNVSPKLLGS QSPKACSAQA A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-74 | 33 | 384 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-76 | 33 | 386 | 360 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-79 | 33 | 386 | 357 | + polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-120 | 33 | 386 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-125 | 47 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38468.1 | 0 | 1 | 387 | 1 | 387 | pollen-expressed protein MF9c [Brassica oleracea] |
GenBank | ABL63521.1 | 0 | 1 | 387 | 1 | 387 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
GenBank | ABN13878.1 | 0 | 1 | 387 | 1 | 387 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 391 | 1 | 391 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 391 | 1 | 391 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000006 | 102 | 303 | 117 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.0000000000001 | 33 | 357 | 34 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000005 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000005 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000005 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |