Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 478121 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42759.1 Isoelectric Point: 8.6912 |
Chromosome | Chromosome/Scaffold: 3 Start: 3280849 End: 3282830 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 377 | 0 |
TSACQAPTPSKVVIPKGQFRLGEIMMSGPCKSPVEITLLGTVLADGNSIHGKEKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKLPIVSIR FDFVTNAEIRDISSIDAKNFHINVIGAKNMTFNNVKIMAPAESPNTDGIHLGRSVGVSIINSRIATGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGR YGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFKRIRGTSGNKDAVKLLCS KGYPCENVQVGDINIQYTGADGPATFMCSNVRPK |
Full Sequence |
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Protein Sequence Length: 398 Download |
MGSYFGISTI FVICLLGFSA NAEVFRIGSP PGSDITQALL RAFTSACQAP TPSKVVIPKG 60 QFRLGEIMMS GPCKSPVEIT LLGTVLADGN SIHGKEKWVV FQRMDGFRLN GGGTFDGEGN 120 AAWRVNNCHK TFECKKLPIV SIRFDFVTNA EIRDISSIDA KNFHINVIGA KNMTFNNVKI 180 MAPAESPNTD GIHLGRSVGV SIINSRIATG DDCVSVGDGM VNLLVKNVVC GPGHGISVGS 240 LGRYGHEQDV SGIRVINCTL QETDNGLRIK TWPSAACSTT ASNIHFENII LRNVSNPILI 300 DQEYCPWNQC NKQKSSSIKL ANISFKRIRG TSGNKDAVKL LCSKGYPCEN VQVGDINIQY 360 TGADGPATFM CSNVRPKLVG TQFPKACNTP PVLTQPK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-74 | 33 | 388 | 363 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-79 | 24 | 387 | 368 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-79 | 33 | 387 | 361 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-117 | 33 | 387 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-124 | 47 | 374 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN13878.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_187440.1 | 0 | 1 | 397 | 1 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_187441.1 | 0 | 1 | 391 | 1 | 391 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-16 | 111 | 328 | 115 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.00000000000003 | 177 | 331 | 154 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 0.0000000000001 | 33 | 371 | 34 | 350 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000001 | 59 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000001 | 59 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |