Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 478122 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 46389.3 Isoelectric Point: 8.5321 |
Chromosome | Chromosome/Scaffold: 3 Start: 3285099 End: 3287061 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 101 | 429 | 0 |
ACAAGSTITVPKGEYLVESLEFKGPCKGPVTLELNGNLKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFT GLTNSKIKSITSTNSKLFHMNILNCKNITLEDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSTPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGV PCTNIALSDINLVHNGKEGPAVSACSNIK |
Full Sequence |
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Protein Sequence Length: 450 Download |
MVGFRRASGV LLVLLVVMAT TIANGTPVVD KAKNAAESVG DKVSEAATTV GDKAKDAAAS 60 VGAKVPGAKA GGASLDVKAS GAKGDGKTDD SAAFMAAWKE ACAAGSTITV PKGEYLVESL 120 EFKGPCKGPV TLELNGNLKA PATVKTTKPH AGWIDFENLA DFTLNGNKAI FDGQGSLAWK 180 ANDCAKTGKC NSLPINIRFT GLTNSKIKSI TSTNSKLFHM NILNCKNITL EDIGIDAPPE 240 SLNTDGIHIG RSNGVNLIGA KIKTGDDCVS IGDGTENLIV ENVECGPGHG ISIGSLGRYP 300 NEQPVKGVTV RKCLIKNTDN GVRIKTWPGS PPGIASNILF EDITMDNVST PVLIDQEYCP 360 YGHCKAGVPS KVKLSDVTIK NIKGTSATKV AVKLMCSKGV PCTNIALSDI NLVHNGKEGP 420 AVSACSNIKP ILSGKLVPAA CTEVAKPGP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-76 | 81 | 438 | 364 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-78 | 81 | 441 | 369 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-85 | 75 | 441 | 370 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-102 | 102 | 441 | 342 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-125 | 76 | 442 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 1 | 449 | 1 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA11160.1 | 0 | 1 | 449 | 1 | 445 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 1 | 449 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 1 | 449 | 1 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 0 | 1 | 449 | 1 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-23 | 131 | 441 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |