Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 478424 |
Family | GH5 |
Protein Properties | Length: 383 Molecular Weight: 42054.7 Isoelectric Point: 8.063 |
Chromosome | Chromosome/Scaffold: 3 Start: 4368816 End: 4370614 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 40 | 343 | 2.6e-31 |
NGKPFYANGFNAYWLAYEATDPATRFMITNVFQNATSHGLTIARTWGFRDGALYRALQTAPGSYDEQTFQVLDFVIAEAKRVGIKLIIPLVNNWDDYGGK KTIQTHLLNSSTSTTSRVNTFTKVAYKDEPAIMAWQLMNEPRCGSDRSGKTLMAWINEMAPYVKSVDPNHLLSTGHEGFYGDSSPQRKNTLNPVSANRVG ADFIANHNIDAIDFASMHCGTDLWLPKLNQNSRLEFIRRWLQGHIEDAQNILKKPLILAEFGLGTDTPGYTLANRDAVFTTTYDIIYASAQKGGPAVGAL FWEL |
Full Sequence |
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Protein Sequence Length: 383 Download |
MKYLCFIVSL AIVTAQSYVG VEAASSNGFV SRNGVQFILN GKPFYANGFN AYWLAYEATD 60 PATRFMITNV FQNATSHGLT IARTWGFRDG ALYRALQTAP GSYDEQTFQV LDFVIAEAKR 120 VGIKLIIPLV NNWDDYGGKK TIQTHLLNSS TSTTSRVNTF TKVAYKDEPA IMAWQLMNEP 180 RCGSDRSGKT LMAWINEMAP YVKSVDPNHL LSTGHEGFYG DSSPQRKNTL NPVSANRVGA 240 DFIANHNIDA IDFASMHCGT DLWLPKLNQN SRLEFIRRWL QGHIEDAQNI LKKPLILAEF 300 GLGTDTPGYT LANRDAVFTT TYDIIYASAQ KGGPAVGALF WELISDGMSN FAGPSSIILS 360 DKSSTVNIIS EQSRKLGLIG GK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.001 | 164 | 247 | 93 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 3.0e-6 | 100 | 303 | 207 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 6.0e-27 | 37 | 343 | 322 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01021.1 | 0 | 85 | 326 | 29 | 293 | (1-4)-beta-mannan endohydrolase-like protein [Arabidopsis thaliana] |
RefSeq | NP_187700.1 | 0 | 1 | 382 | 1 | 406 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_187701.1 | 0 | 1 | 380 | 1 | 403 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_189675.1 | 0 | 1 | 326 | 1 | 333 | (1-4)-beta-mannan endohydrolase family [Arabidopsis thaliana] |
RefSeq | NP_201447.1 | 0 | 1 | 379 | 1 | 400 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 25 | 376 | 2 | 369 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 28 | 347 | 13 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 28 | 347 | 13 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 28 | 347 | 13 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 28 | 347 | 13 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |