| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 478494 |
| Family | GT41 |
| Protein Properties | Length: 898 Molecular Weight: 99840.2 Isoelectric Point: 6.2169 |
| Chromosome | Chromosome/Scaffold: 3 Start: 4622551 End: 4628505 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT41 | 355 | 830 | 0 |
| VYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLYEAHRDWGWRFTRLHPQYT SWDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKVLKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGH TANNKLGTMACRPAPIQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPECFLCYTPSPEAGPVCPTPTLSNGFVTFGSFNNLAKITPKVL QVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN VGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVALESAYRNMWKKYCKG | |||
| Full Sequence |
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| Protein Sequence Length: 898 Download |
| MVGLEDDTER ERSPIVENGF SNGSRSSPTL SYANILRARN KFADALALYE AMLEKDSKNV 60 EAHIGKGICL QTQNKGNLAF DCFSEAIRLD PHNACALTHC GILHKEEGRL VEAAESYQKA 120 LMADASYKPA AECLAIVLTD LGTSLKLAGN TQEGIQKYYE ALKIDPHYAP AYYNLGVVYS 180 EMMQYDNALS CYEKAALERP MYAEAYCNMG VIYKNRGDLE MAITCYERCL AVSPNFEIAK 240 NNMAIALTDL GTKVKLEGDV TQGVAYYKKA LYYNWHYADA MYNLGVAYGE MLKFDMAIVF 300 YELAFHFNPH CAEACNNLGV LYKDRDNLDK AVECYQMALS IKPNFAQSLN NLGVVYTVQG 360 KMDAAASMIE KAILANPTYA EAFNNLGVLY RDAGNITMAI DAYEECLKID PDSRNAGQNR 420 LLAMNYINEG LDDKLYEAHR DWGWRFTRLH PQYTSWDNLK DPERPITIGY ISPDFFTHSV 480 SYFIEAPLTH HDYTKYKVVV YSAVVKADAK TYRFRDKVLK KGGVWKDIYG IDEKKIASMV 540 REDKIDILVE LTGHTANNKL GTMACRPAPI QVTWIGYPNT TGLPTVDYRI TDSLADPPDT 600 KQKQVEELVR LPECFLCYTP SPEAGPVCPT PTLSNGFVTF GSFNNLAKIT PKVLQVWARI 660 LCAVPNSRLV VKCKPFCCDS IRQRFLTTLE QLGLESKRVD LLPLILFNHD HMQAYSLMDI 720 SLDTFPYAGT TTTCESLYMG VPCVTMAGSV HAHNVGVSLL TKVGLGHLVA KNEDEYVQLS 780 VDLASDVTAL SKLRMSLRDL MAGSPVCNGP SFAVALESAY RNMWKKYCKG EVPSLRRMEM 840 LQKEVQDDPL ISKDSGPSRL SVTGEATPSL KANGSAPVTS SLPTQSPQIS KRMDSTS* 900 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| TIGR02917 | PEP_TPR_lipo | 6.0e-18 | 39 | 412 | 376 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| TIGR02917 | PEP_TPR_lipo | 2.0e-19 | 33 | 408 | 413 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| TIGR02917 | PEP_TPR_lipo | 5.0e-25 | 24 | 412 | 417 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| COG3914 | Spy | 6.0e-91 | 295 | 827 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| GO:0042802 | identical protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAX46402.1 | 0 | 10 | 886 | 12 | 909 | putative SPINDLY protein [Rosa luciae] |
| RefSeq | NP_187761.1 | 0 | 1 | 897 | 1 | 914 | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002281883.1 | 0 | 10 | 886 | 12 | 906 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308458.1 | 0 | 10 | 879 | 12 | 909 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 10 | 888 | 12 | 912 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 6e-36 | 244 | 616 | 9 | 386 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 3e-24 | 638 | 833 | 524 | 715 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 2e-17 | 91 | 247 | 6 | 155 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 0.000000000000007 | 138 | 285 | 12 | 152 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 0.00000001 | 33 | 176 | 16 | 152 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 408 | 805 | 0 |
| GT041789 | 337 | 323 | 659 | 0 |
| GT041789 | 109 | 150 | 256 | 0.00000000000007 |
| GT041789 | 125 | 214 | 336 | 0.00001 |
| GT041789 | 61 | 625 | 685 | 0.56 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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