| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 478721 |
| Family | AA1 |
| Protein Properties | Length: 552 Molecular Weight: 61852.5 Isoelectric Point: 9.5439 |
| Chromosome | Chromosome/Scaffold: 3 Start: 5435730 End: 5437866 |
| Description | SKU5 similar 13 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 35 | 503 | 0 |
| YGTVAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLLTWIGLQHRKNSWQDGVTGTSCPIPAGTNFTYHFQPKDQIGSYFYYPSTALHRF AGGFGGLRVNSRLLIPVPYADPEDDRTILINDWYTKSHTALKNFLDSGRTLGSPDGVLINGKSGKIGGNNAPLFTMKPGKTYKYRICNVGFKSTLNFRIQ GHKMKLVEMEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTRFLKKEVSTVGVMSYEGSNVQASNEIPKAPVGWAWSLNQFRSFRWNLTASA ARPNPQGSYHYGKINITRTIKLANTKNLVNGKVRFGFNGVSHVDTETPLKLAEYFGMSEKVFKYNVIKDEPAAKITTLTVEPNVLNITFRTFVEVIFENH EKSMQSFHLDGYSFFAVASEPGRWTPEKRKNYNLLDAVSRHTVQVYPKSWSAILLTFDNAGMWNIRSEN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 552 Download |
| MQGGRLLTVL VCLASTVAMV NAGDPYFYYT WNVTYGTVAP LGIPQQVILI NGQFPGPNLN 60 STSNNNVVIN VFNNLDEPFL LTWIGLQHRK NSWQDGVTGT SCPIPAGTNF TYHFQPKDQI 120 GSYFYYPSTA LHRFAGGFGG LRVNSRLLIP VPYADPEDDR TILINDWYTK SHTALKNFLD 180 SGRTLGSPDG VLINGKSGKI GGNNAPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL 240 VEMEGSHVLQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG 300 SNVQASNEIP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK 360 NLVNGKVRFG FNGVSHVDTE TPLKLAEYFG MSEKVFKYNV IKDEPAAKIT TLTVEPNVLN 420 ITFRTFVEVI FENHEKSMQS FHLDGYSFFA VASEPGRWTP EKRKNYNLLD AVSRHTVQVY 480 PKSWSAILLT FDNAGMWNIR SENWERRYLG QQLYVSVLSP EKSLRDEYNI PLNTNLCGIV 540 KGLPLPTPYT I* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02168 | PLN02168 | 3.0e-180 | 10 | 541 | 546 | + copper ion binding / pectinesterase | ||
| PLN02354 | PLN02354 | 0 | 1 | 551 | 552 | + copper ion binding / oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 6 | 538 | 534 | + oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 17 | 542 | 527 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 15 | 548 | 540 | + oxidoreductase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD10639.1 | 0 | 4 | 550 | 3 | 558 | putative pollen specific protein [Arabidopsis thaliana] |
| EMBL | CAA47177.1 | 0 | 24 | 549 | 25 | 552 | Bplo [Brassica napus] |
| RefSeq | NP_175953.1 | 0 | 1 | 550 | 1 | 553 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_187948.1 | 0 | 1 | 551 | 1 | 551 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_564697.1 | 0 | 4 | 550 | 3 | 549 | sks14 (SKU5 Similar 14); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 28 | 538 | 5 | 539 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1asq_A | 0 | 28 | 538 | 5 | 539 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1asp_B | 0 | 28 | 538 | 5 | 539 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1asp_A | 0 | 28 | 538 | 5 | 539 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1aso_B | 0 | 28 | 538 | 5 | 539 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
