y
Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 479173 |
Family | CE8 |
Protein Properties | Length: 345 Molecular Weight: 38794 Isoelectric Point: 8.5398 |
Chromosome | Chromosome/Scaffold: 3 Start: 7270163 End: 7271944 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 46 | 332 | 0 |
IIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVIESSQSSVDNVASATFKVEANHFVAFGISIRNDAPIGM AFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRENAEENTGYVFIRGK VYGIDEVYLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTENLYHGEYKCHGPGAERQKRSDWAKELTKQEVESFLSIDFIDG |
Full Sequence |
---|
Protein Sequence Length: 345 Download |
MDHITRMILV LTLVVMSVWG SDASAMQKTK FDAPLLTEKI ATNRSIIVDI EGKGDYTSVQ 60 KAIDAVPVGN SNWIIVHVRK GIYKERVHIP ENKPFIFMRG NGKGKTVIES SQSSVDNVAS 120 ATFKVEANHF VAFGISIRND APIGMAFTSE NQSVAAFVAA DKVAFYHCAF YSLHNTLFDN 180 KGRHYYHECY IQGSIDFIFG RATSIFNNCE IFVISDKRVK PYGSITAHHR ENAEENTGYV 240 FIRGKVYGID EVYLGRAKGP YSRVIFAKTY LSKTVVPDGW TNWSYHGSTE NLYHGEYKCH 300 GPGAERQKRS DWAKELTKQE VESFLSIDFI DGTSWLPVWL QQKS* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 6.0e-78 | 34 | 336 | 306 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 1.0e-80 | 44 | 336 | 297 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-83 | 46 | 336 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-89 | 15 | 337 | 333 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 3 | 340 | 338 | + Probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 9 | 340 | 15 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 1 | 343 | 1 | 343 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 8 | 340 | 11 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 3 | 339 | 7 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 20 | 340 | 31 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 7.00649e-43 | 45 | 336 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-37 | 47 | 336 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-16 | 56 | 211 | 18 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-16 | 56 | 211 | 18 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-16 | 56 | 211 | 18 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |