| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 479940 |
| Family | GH14 |
| Protein Properties | Length: 573 Molecular Weight: 63503.9 Isoelectric Point: 5.4842 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11615359 End: 11618040 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 106 | 528 | 0 |
| FVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMIDVWWGLVEKESPGSYNWGGYNELLEMAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVIEE VDKDPDLAYTDQWGRRNCEYISLGADTLPVLKGRTPVQCYADFMRAFRDNFKHLLGETIVEIQVGMGPAGELRYPSYPEQEGTWKFPGIGAFQCYDKYSL SSLKAAAEAYGKPEWGSTGPTDAGHYNNWPEDTQFFKKEGGGWNTEYGDFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPE LTAGYYNTRFRDGYLPIAQMLARHNAIFNFTCIEMRDHEQPQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAHEQILKASVLNLDQNNQGEPR EMCAFTYLRMNPELFQADNWGKF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 573 Download |
| MALNLSHQLG VLAGTPIKSG EMTDSSLSIS PPSARMMTPK AMNRNYKAHG TDPSPPMSPI 60 LGGTRADLSV ACKAFAVENG VETIEEQRTY KEGGIGGEGG GGVPVFVMMP LDSVTMGNTV 120 NRRKAMKASL QALKSAGVEG IMIDVWWGLV EKESPGSYNW GGYNELLEMA KKLGLKVQAV 180 MSFHQCGGNV GDSVTIPLPQ WVIEEVDKDP DLAYTDQWGR RNCEYISLGA DTLPVLKGRT 240 PVQCYADFMR AFRDNFKHLL GETIVEIQVG MGPAGELRYP SYPEQEGTWK FPGIGAFQCY 300 DKYSLSSLKA AAEAYGKPEW GSTGPTDAGH YNNWPEDTQF FKKEGGGWNT EYGDFFLSWY 360 SQMLLDHGER ILSSAKSIFE NTGVKISVKI AGIHWHYGTR SHAPELTAGY YNTRFRDGYL 420 PIAQMLARHN AIFNFTCIEM RDHEQPQDAL CAPEKLVNQV ALATLAAEVP LAGENALPRY 480 DDYAHEQILK ASVLNLDQNN QGEPREMCAF TYLRMNPELF QADNWGKFVA FVKKMVEGRD 540 SHRCWEEVER ETEHFVHVTQ PLVQEVAVAL TH* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 3.0e-140 | 103 | 535 | 443 | + beta-amylase | ||
| PLN02905 | PLN02905 | 6.0e-144 | 103 | 535 | 437 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 1 | 572 | 575 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 0 | 103 | 538 | 436 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 103 | 535 | 434 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL37169.1 | 0 | 1 | 572 | 1 | 569 | AF319168_1 putative chloroplast-targeted beta-amylase [Brassica napus] |
| EMBL | CAN71375.1 | 0 | 3 | 572 | 1 | 570 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_189034.1 | 0 | 1 | 572 | 1 | 575 | BAM1 (BETA-AMYLASE 1); beta-amylase [Arabidopsis thaliana] |
| RefSeq | XP_002285569.1 | 0 | 2 | 572 | 3 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518196.1 | 0 | 1 | 572 | 1 | 574 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1b1y_A | 0 | 100 | 535 | 3 | 435 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 1wdp_A | 0 | 103 | 540 | 12 | 446 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 1q6c_A | 0 | 103 | 540 | 12 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 103 | 540 | 12 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1v3i_A | 0 | 103 | 540 | 12 | 446 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO779314 | 410 | 161 | 570 | 0 |
| EG518392 | 307 | 117 | 423 | 0 |
| HO798206 | 347 | 224 | 570 | 0 |
| HO826564 | 408 | 159 | 566 | 0 |
| DT555349 | 322 | 190 | 511 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
