| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 479948 |
| Family | CBM43 |
| Protein Properties | Length: 456 Molecular Weight: 50422.2 Isoelectric Point: 4.2962 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11712519 End: 11714021 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 337 | 417 | 3.4e-25 |
| WCVLDPNAYNLDDLPDNIDYACSLSDCTALGYGSSCNHLTAIGNASYAFNMYYQMHDQKTWDCDFLGLGLITDEDPSDELC | |||
| GH17 | 2 | 314 | 0 |
| ASHQLPPEKVVKMLQDNGFTKLKLFEADQNILDALIGSQIEVMIGIPNRFLKELAQDTSVAASWVEENVTAYSYNGGVNIKYIAVGNEPFLQTYNGTYVE FTLPALINIQRALEEADLKGVTVTVPFNADIYFSPEANPVPSAGDFRPELRDATIEIINFLYSHDSPFTVNIYPFLSLYGNAYFPLDFAFFDGTNKSLRD GNLVYTNVFDANLDTLICAMEKYSFLGMKIIVGEVGWPTDGDKNANLKSAKRFNQGMVKHAMSGNGTPARKGVIMDVYLFSLVDEDAKSIAPGTFERHWG IFGFDGRPKYELD | |||
| Full Sequence |
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| Protein Sequence Length: 456 Download |
| MASHQLPPEK VVKMLQDNGF TKLKLFEADQ NILDALIGSQ IEVMIGIPNR FLKELAQDTS 60 VAASWVEENV TAYSYNGGVN IKYIAVGNEP FLQTYNGTYV EFTLPALINI QRALEEADLK 120 GVTVTVPFNA DIYFSPEANP VPSAGDFRPE LRDATIEIIN FLYSHDSPFT VNIYPFLSLY 180 GNAYFPLDFA FFDGTNKSLR DGNLVYTNVF DANLDTLICA MEKYSFLGMK IIVGEVGWPT 240 DGDKNANLKS AKRFNQGMVK HAMSGNGTPA RKGVIMDVYL FSLVDEDAKS IAPGTFERHW 300 GIFGFDGRPK YELDLSGKGN DKPLVPVEDV NYLPKTWCVL DPNAYNLDDL PDNIDYACSL 360 SDCTALGYGS SCNHLTAIGN ASYAFNMYYQ MHDQKTWDCD FLGLGLITDE DPSDELCEFP 420 VMIDTGNSPR LQPGSSRVFT RVAAAVLVML VLPIL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 6.0e-5 | 188 | 306 | 121 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-17 | 336 | 405 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-30 | 336 | 419 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-69 | 1 | 314 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28113.1 | 0 | 1 | 432 | 554 | 959 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189076.1 | 0 | 1 | 455 | 46 | 500 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002281500.1 | 0 | 1 | 432 | 36 | 466 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324967.1 | 0 | 1 | 428 | 16 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515573.1 | 0 | 1 | 452 | 37 | 488 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 3 | 316 | 11 | 315 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 3ur8_A | 0 | 3 | 316 | 11 | 315 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 3ur7_B | 0 | 3 | 316 | 11 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 3 | 316 | 11 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3f55_D | 0 | 1 | 316 | 8 | 316 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797198 | 425 | 3 | 425 | 0 |
| EX345626 | 313 | 73 | 384 | 0 |
| EX343142 | 311 | 110 | 419 | 0 |
| EX345865 | 296 | 73 | 367 | 0 |
| EX341879 | 297 | 93 | 388 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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