| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 480193 |
| Family | CBM43 |
| Protein Properties | Length: 474 Molecular Weight: 51494.3 Isoelectric Point: 5.8978 |
| Chromosome | Chromosome/Scaffold: 3 Start: 14271536 End: 14273788 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 385 | 468 | 1.3e-33 |
| WCVANGDAGEEKLQGGLDYACGEGGADCSSIQPGANCYSPDTLEAHASFAFNSYYQKKGRAGGSCYFGGAAYVVSQPPKYGRCE | |||
| GH17 | 25 | 344 | 0 |
| IGVNYGRISDELPSAFKVVQLLKSQGIDRVKIFDADPSVLKALSGSGIKVTVDLPNELLFSAAKRTSFAVSWVKRNVAAYHPSTQIESIAVGNEVFVDTH NTTSFLIPAMRNIHKALMSFNIHSDIKISSPLALSALQNSYPSSSGSFRPELVDSVIKPMLDFLRETGSRLMINVYPFFAYEGNSDVIPLDYALLRENPG MVDSGNGLRYFNLFDAQIDAVFAAMSALKYDDIEIIVTETGWPSKGDENEVGATLANAASYNGNLIRRILTRGGTPLRPKADLTVYLFALFNENKKLGPT SERNYGLFFPDEKKVYDIPF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 474 Download |
| MDLLTPLIFL ILLFFFFFLT EAGSIGVNYG RISDELPSAF KVVQLLKSQG IDRVKIFDAD 60 PSVLKALSGS GIKVTVDLPN ELLFSAAKRT SFAVSWVKRN VAAYHPSTQI ESIAVGNEVF 120 VDTHNTTSFL IPAMRNIHKA LMSFNIHSDI KISSPLALSA LQNSYPSSSG SFRPELVDSV 180 IKPMLDFLRE TGSRLMINVY PFFAYEGNSD VIPLDYALLR ENPGMVDSGN GLRYFNLFDA 240 QIDAVFAAMS ALKYDDIEII VTETGWPSKG DENEVGATLA NAASYNGNLI RRILTRGGTP 300 LRPKADLTVY LFALFNENKK LGPTSERNYG LFFPDEKKVY DIPFTTEGLK HYRDGGHTPV 360 TGGDQTTTKP PMSGGVSKSL NGHSWCVANG DAGEEKLQGG LDYACGEGGA DCSSIQPGAN 420 CYSPDTLEAH ASFAFNSYYQ KKGRAGGSCY FGGAAYVVSQ PPKYGRCEFP TGY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.006 | 44 | 320 | 283 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-26 | 384 | 456 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-42 | 384 | 469 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-105 | 25 | 344 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD26909.1 | 0 | 21 | 462 | 21 | 461 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_178637.2 | 0 | 21 | 473 | 21 | 472 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002302861.1 | 0 | 10 | 473 | 9 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333242.1 | 0 | 19 | 473 | 18 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525335.1 | 0 | 21 | 462 | 20 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 25 | 344 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 25 | 344 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 25 | 344 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 25 | 345 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 25 | 345 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
