| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 480358 |
| Family | GH10 |
| Protein Properties | Length: 571 Molecular Weight: 64634.8 Isoelectric Point: 6.213 |
| Chromosome | Chromosome/Scaffold: 3 Start: 19340556 End: 19342733 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 204 | 465 | 0 |
| VKPSFILGCAMNYRILESDSYKEWFVSRFRLTSFTNEMKWYATEAVRGQENYKLADSMMQLAAENGVLVKGHTVLWDDKYWQPNWVKTITDPEDLKNVTL NRINSVMKRYKGRLVGWDVMNENVHFNYFENMLGGNASAIVYSLASTIDPDIPLFLNEFNTVEYAKDRVVSPVNMVKRMQEIVSFPGNSNIKGGIGAQGH FAPIQPNLAYMRSALDTLGSLGFPVWLTEVDMDKFPDQVKYMEEILREAYSHPAVKAIILYG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 571 Download |
| MKRFNNGFFQ LVFFLISLPL LGSGLCMDPF SYDQSLQSEC LMEPPQTTGN TVGQGSKEFK 60 INESGGIRNV VERVDLQEGN IYSVSAWVKL RNESQRKVGM TFRGKNGINV FGGEVMAKRG 120 CWSLLKGGIT ADFSGPIDIL FKSDGLAASE ISVQNVRMQR FNKTQWRLQQ DQIIEKIRKN 180 TVRFQMSFQN KSALKGSVIS IEQVKPSFIL GCAMNYRILE SDSYKEWFVS RFRLTSFTNE 240 MKWYATEAVR GQENYKLADS MMQLAAENGV LVKGHTVLWD DKYWQPNWVK TITDPEDLKN 300 VTLNRINSVM KRYKGRLVGW DVMNENVHFN YFENMLGGNA SAIVYSLAST IDPDIPLFLN 360 EFNTVEYAKD RVVSPVNMVK RMQEIVSFPG NSNIKGGIGA QGHFAPIQPN LAYMRSALDT 420 LGSLGFPVWL TEVDMDKFPD QVKYMEEILR EAYSHPAVKA IILYGGPEVS GFNKLTLADK 480 DFNNTDIGDL IDNLLREWKQ EPVEIPIQHH EHNDEEDGPI IGFSPEISLL HGHYRVTVTN 540 PTMKNLSTSF SLEVTKEMSH LQEVQLVLDA * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 1.0e-32 | 239 | 465 | 251 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-46 | 205 | 483 | 304 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-77 | 241 | 491 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC69373.1 | 0 | 42 | 570 | 1 | 552 | 1,4-beta-xylan endohydrolase [Arabidopsis thaliana] |
| GenBank | AAQ65190.1 | 0 | 42 | 570 | 1 | 529 | At2g14690 [Arabidopsis thaliana] |
| RefSeq | NP_179076.3 | 0 | 1 | 570 | 1 | 570 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195107.1 | 0 | 57 | 570 | 25 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0 | 1 | 570 | 1 | 570 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 2e-27 | 197 | 435 | 5 | 240 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 1i1w_A | 2e-27 | 197 | 435 | 5 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 3e-27 | 197 | 435 | 5 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1tux_A | 3e-27 | 193 | 435 | 1 | 240 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1k6a_A | 4e-27 | 197 | 435 | 5 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
