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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 480819 |
Family | CE8 |
Protein Properties | Length: 345 Molecular Weight: 38266.8 Isoelectric Point: 8.237 |
Chromosome | Chromosome/Scaffold: 3 Start: 23448133 End: 23449913 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 41 | 332 | 0 |
IIVNPNDARYYKTVQSAIDSIPLQNQNWIRILIRSGIYKEKVTIPADKGYIYMQGRGIEKTIIAYGDHQQTDTSATFTSYASNIIITGITFKNTYNIASI SSLATPTKPAVAARMLGDKYAIIDSSFDGFQDTLCDGLGRHYYKRCVISGGIDFIFGYAQSIFEGCTLKLSIGIYPPNEPYATITAQGRQSPMDKGGFVF KDCTVIGNGKVKALLGRAWEPYARVIFYHSNFGDAILPIGWDAWNGKGQEEHITFVEFGCTGVGADMSKRVSWLRKASEKDVLQFTNLTFID |
Full Sequence |
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Protein Sequence Length: 345 Download |
MKGVTFHSFC YSYFKVCLLV ILLAYGSAEG DENSSQIAKT IIVNPNDARY YKTVQSAIDS 60 IPLQNQNWIR ILIRSGIYKE KVTIPADKGY IYMQGRGIEK TIIAYGDHQQ TDTSATFTSY 120 ASNIIITGIT FKNTYNIASI SSLATPTKPA VAARMLGDKY AIIDSSFDGF QDTLCDGLGR 180 HYYKRCVISG GIDFIFGYAQ SIFEGCTLKL SIGIYPPNEP YATITAQGRQ SPMDKGGFVF 240 KDCTVIGNGK VKALLGRAWE PYARVIFYHS NFGDAILPIG WDAWNGKGQE EHITFVEFGC 300 TGVGADMSKR VSWLRKASEK DVLQFTNLTF IDEEGWLSRL PIKF* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 8.0e-71 | 40 | 337 | 307 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 5.0e-76 | 39 | 337 | 305 | + Probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-77 | 32 | 337 | 317 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 7.0e-112 | 38 | 342 | 305 | + probable pectinesterase | ||
PLN02176 | PLN02176 | 0 | 1 | 344 | 344 | + putative pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY78730.1 | 0 | 20 | 343 | 1 | 317 | pectinesterase family protein [Arabidopsis thaliana] |
GenBank | ACC68156.1 | 0 | 1 | 344 | 1 | 344 | putative pectinesterase family protein [Arabidopsis halleri subsp. halleri] |
RefSeq | NP_179505.1 | 0 | 1 | 344 | 1 | 339 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_850471.2 | 0 | 11 | 343 | 7 | 333 | pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 51 | 342 | 11 | 289 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-33 | 34 | 344 | 2 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-31 | 51 | 344 | 15 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000000000002 | 46 | 341 | 13 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000000000002 | 46 | 341 | 13 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000000000002 | 46 | 341 | 13 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |