| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 480902 |
| Family | GH5 |
| Protein Properties | Length: 433 Molecular Weight: 49585.3 Isoelectric Point: 6.9551 |
| Chromosome | Chromosome/Scaffold: 3 Start: 24002319 End: 24004779 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 52 | 378 | 3.2e-33 |
| DGKALYVNGWNSYWFMDHAVNDHSRHRVGAMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFKALDHVIAEAKTHGVRLLLSLVNNLQAYGGKT QYVNWAWQEGVGLSSSNDSFFFDPSIRRYFKNYLTVLLTRKNSLTGIEYRNDPTIFAWELINEPRCMSDVSGDTLQDWINEMTAFIKSIDNKHLLTVGLE GFYGPNNPKRLTVNPERWASELGSDFVRNSDSPNIDFASVHIYPDHWFHDQGFEEKLKFVVKWMLSHIEDGDKELKKPVLFTEFGLSNLNKDYDPSQRDR FYRTIFDVIYKSAKRKRSGAGTLVWQF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 433 Download |
| MAPTGNGPVI PILGFLTCVA FIYLSFGDLL FDFKREGELG FVKRNGTQFV VDGKALYVNG 60 WNSYWFMDHA VNDHSRHRVG AMLEAGAKMG LTVCRTWAFN DGGYNALQIS PGRFDERVFK 120 ALDHVIAEAK THGVRLLLSL VNNLQAYGGK TQYVNWAWQE GVGLSSSNDS FFFDPSIRRY 180 FKNYLTVLLT RKNSLTGIEY RNDPTIFAWE LINEPRCMSD VSGDTLQDWI NEMTAFIKSI 240 DNKHLLTVGL EGFYGPNNPK RLTVNPERWA SELGSDFVRN SDSPNIDFAS VHIYPDHWFH 300 DQGFEEKLKF VVKWMLSHIE DGDKELKKPV LFTEFGLSNL NKDYDPSQRD RFYRTIFDVI 360 YKSAKRKRSG AGTLVWQFLI EGMEGFNDDF GIVPWEQDSI QRLMIEQSCR LSRVTGRHLL 420 DKKSIEMCSH RP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 0.009 | 87 | 351 | 288 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam12876 | Cellulase-like | 0.0006 | 199 | 294 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| pfam00150 | Cellulase | 3.0e-8 | 202 | 348 | 148 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-23 | 81 | 432 | 365 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD20927.1 | 0 | 2 | 432 | 3 | 403 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
| GenBank | ABK95966.1 | 0 | 4 | 431 | 6 | 434 | unknown [Populus trichocarpa] |
| RefSeq | NP_179660.2 | 0 | 2 | 432 | 3 | 433 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_194561.1 | 0 | 1 | 431 | 1 | 430 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330687.1 | 0 | 4 | 431 | 6 | 434 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 41 | 415 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
