| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 481121 |
| Family | PL4 |
| Protein Properties | Length: 682 Molecular Weight: 77894.9 Isoelectric Point: 8.8541 |
| Chromosome | Chromosome/Scaffold: 4 Start: 1067329 End: 1073604 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 62 | 663 | 0 |
| HDDTVVIDNGIVQVTFSSPQGLITGIKYHGIDNVLDDEIEDRGYWDVVWYEPGKKSETDKLEGTKFEIITQNEEQIEISFTRTWTISKRGSLVPLNVDKR YIIRSGVSGIYMYGILERLGGWPDVDMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRDNSKTLAYKEAVLLTNPSNPMLKGEVDDKYMYSMEDKDNN VHGWITSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFTSTHYAGKEMRMDYRNGEPWKKVFGPVLVYLNSVSPKESTLRLWRDAKRQMAAEVK SWPYDFVTSEDYPLRHQRGTIEGQFLIKDSYVSRLKIYGKFAFVGLAPIGEAGSWQTESKGYQFWTKADRKGRFIIENVRAGNYSLYAWGIGFIGDYKYE QNIIITPGSEMNVGPIVYEPPRNGPTLWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTIGVSDYRRDWFFAHVTR NFGNDTYQPTTWQIIFNLKNVNRIGLYTLRLALASAASSELQIRINDPKSGHIFTTGLIGKDNAIARHGIHGLYRLYSIDIAGNLLSVGDNTIYLTQTRS IG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 682 Download |
| MKVGAPANKP GRIIVQVLLL HLLLLLLLLQ SVHSQRSQNK LNITKPGQNI PALTVQLRRV 60 GHDDTVVIDN GIVQVTFSSP QGLITGIKYH GIDNVLDDEI EDRGYWDVVW YEPGKKSETD 120 KLEGTKFEII TQNEEQIEIS FTRTWTISKR GSLVPLNVDK RYIIRSGVSG IYMYGILERL 180 GGWPDVDMDQ IRIVFKLNPK KFDFMAISDD RQRSMPSMAD RDNSKTLAYK EAVLLTNPSN 240 PMLKGEVDDK YMYSMEDKDN NVHGWITSDP PVGFWMITPS DEFRLGGPIK QDLTSHAGPI 300 TLSMFTSTHY AGKEMRMDYR NGEPWKKVFG PVLVYLNSVS PKESTLRLWR DAKRQMAAEV 360 KSWPYDFVTS EDYPLRHQRG TIEGQFLIKD SYVSRLKIYG KFAFVGLAPI GEAGSWQTES 420 KGYQFWTKAD RKGRFIIENV RAGNYSLYAW GIGFIGDYKY EQNIIITPGS EMNVGPIVYE 480 PPRNGPTLWE IGVPDRTAGE FYIPDPYPTL MNKLYVNPLQ DRFRQYGLWD RYADLYPQND 540 LVYTIGVSDY RRDWFFAHVT RNFGNDTYQP TTWQIIFNLK NVNRIGLYTL RLALASAASS 600 ELQIRINDPK SGHIFTTGLI GKDNAIARHG IHGLYRLYSI DIAGNLLSVG DNTIYLTQTR 660 SIGMFQGVMY DYIRLESPFR T* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam13620 | CarboxypepD_reg | 0.007 | 417 | 474 | 58 | + Carboxypeptidase regulatory-like domain. |
| cd10316 | RGL4_M | 2.0e-28 | 378 | 477 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
| cd10317 | RGL4_C | 6.0e-45 | 489 | 676 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
| cd10320 | RGL4_N | 5.0e-77 | 57 | 342 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
| pfam06045 | Rhamnogal_lyase | 6.0e-87 | 32 | 247 | 220 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 1 | 681 | 1 | 677 | At2g22620 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 1 | 681 | 1 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 1 | 678 | 1 | 675 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 52 | 678 | 44 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 66 | 681 | 2 | 621 | lyase, putative [Ricinus communis] |
