Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 482653 |
Family | CE8 |
Protein Properties | Length: 405 Molecular Weight: 44718.9 Isoelectric Point: 6.3363 |
Chromosome | Chromosome/Scaffold: 4 Start: 17458358 End: 17460067 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 89 | 378 | 0 |
TVDLHGCGNFSNVQSAIDAVPDLSPSKTLIIVNSGCYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKSAGNTAESFSFVVFAANFTAYNISFKNNAPE PDPGEADAQAVSLRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKDCFIQGSIDFIFGNGRSLYKDCTINSIAKGNTSGVTGSITAQGRQSEDEQTGFSFV NCKIAGSGEILLGRAWGAYATVVFSDTYMSGIISPEGWNNWGDPDKEKTVTFGEHKCYGPGADYKERVLFGKQLTDSEASSFIDISFIDG |
Full Sequence |
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Protein Sequence Length: 405 Download |
MPIKPVLTTL IALLSIILAL YTIQFPSSRS LSSIATNIGA LAIHSTFYGH KHHHHHHHHH 60 HHHHYEPIKC CEKWTSRLTH QYKTSLVLTV DLHGCGNFSN VQSAIDAVPD LSPSKTLIIV 120 NSGCYREKVT VNENKTNLVI QGRGYQNTSI EWNDTAKSAG NTAESFSFVV FAANFTAYNI 180 SFKNNAPEPD PGEADAQAVS LRIEGDQAAF YGCGFYGAQD TLLDDKGRHF FKDCFIQGSI 240 DFIFGNGRSL YKDCTINSIA KGNTSGVTGS ITAQGRQSED EQTGFSFVNC KIAGSGEILL 300 GRAWGAYATV VFSDTYMSGI ISPEGWNNWG DPDKEKTVTF GEHKCYGPGA DYKERVLFGK 360 QLTDSEASSF IDISFIDGDE WLRHTNIVSE FTSKDIRDDL IEFY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-101 | 84 | 383 | 300 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 6.0e-105 | 86 | 382 | 304 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-107 | 87 | 382 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-132 | 83 | 384 | 309 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 8.0e-137 | 84 | 383 | 303 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 88 | 385 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5.04467e-44 | 94 | 387 | 11 | 309 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-21 | 98 | 370 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-21 | 98 | 370 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-21 | 98 | 370 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |