Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 483504 |
Family | GH28 |
Protein Properties | Length: 385 Molecular Weight: 40807.5 Isoelectric Point: 8.281 |
Chromosome | Chromosome/Scaffold: 4 Start: 21411044 End: 21412722 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 371 | 0 |
ETACASSRPVTIVVPKGRFLLRSVTFDGSKCKPKPVTFRIDGTLLAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARGASLWDCKKSGKNCPSGATTIG FQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSTVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK DSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCPDHDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSK KPCTGIRLEDVKLTYRNKPAASACTHA |
Full Sequence |
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Protein Sequence Length: 385 Download |
MASLLVLSVF FFLSSCSAQS YNVLSFGAKP DGKTDATKAF MAVWETACAS SRPVTIVVPK 60 GRFLLRSVTF DGSKCKPKPV TFRIDGTLLA PADYRVIGNE DYWIFFQHLD GITVYGGVLD 120 ARGASLWDCK KSGKNCPSGA TTIGFQSSSN VVVSGLTSLN SQMFHVVING CNNVKLQGVK 180 VLAAGNSPNT DGIHVQSSST VSIFNTKIST GDDCVSIGPG TNGLWIENVA CGPGHGISIG 240 SLGKDSVESG VQNVTVKTVT FTGTDNGVRI KSWARPSSGF AKNIRFQHCV MNNVENPIII 300 DQNYCPDHDC PRQVSGIKIS DVLFVDIHGT SATEVGVKLD CSSKKPCTGI RLEDVKLTYR 360 NKPAASACTH AGGIEAGFFQ PNCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-90 | 22 | 383 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 48 | 364 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-94 | 23 | 381 | 368 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-108 | 17 | 383 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-141 | 21 | 384 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28534.1 | 0 | 1 | 384 | 1 | 384 | unknown [Arabidopsis thaliana] |
EMBL | CAB75804.1 | 0 | 18 | 384 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_181915.1 | 0 | 1 | 384 | 1 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_191544.2 | 0 | 18 | 384 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002529090.1 | 0 | 3 | 384 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 116 | 358 | 123 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 2e-17 | 58 | 334 | 28 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 2e-17 | 107 | 365 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-17 | 107 | 365 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.00000000000002 | 116 | 368 | 81 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |