Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 484177 |
Family | PL1 |
Protein Properties | Length: 456 Molecular Weight: 51407.7 Isoelectric Point: 10.1607 |
Chromosome | Chromosome/Scaffold: 5 Start: 986860 End: 988965 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 170 | 368 | 0 |
IVFARSMIIKLQQELIITNDKTIDGRGARIYITGGAGLTLQFVRNVIIHNVHIKLIKKGVGGVIRDSEHHYGHRTMSDGDGINIFGATNVWIDHVSMTDC SDGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRYGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 456 Download |
MLNLGSYVFV FVSLSLTVVV PSVQAHIAVY DDYWTQRQTI ALRQTLESYD PNPDNVTDHF 60 NYHAALAMET TGIVNETRRD LRQVRSGKKK PRRGGRFESL NAIDKCWRGD KNWDKNRKKL 120 ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LNPKPGTIRH AVTRDRPLWI VFARSMIIKL 180 QQELIITNDK TIDGRGARIY ITGGAGLTLQ FVRNVIIHNV HIKLIKKGVG GVIRDSEHHY 240 GHRTMSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG 300 GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRYGLVHVVN NDYTHWEMYA IGGNMNPTII 360 SQGNRFIAPP IEDSKQVTKR EYTPYPEWKT WNWQSEKDYF LNGAYFVQSG KANAWSSTPK 420 NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-20 | 26 | 81 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 8.0e-29 | 131 | 366 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-62 | 181 | 366 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-73 | 176 | 370 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB69759.1 | 0 | 1 | 455 | 5 | 459 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 18 | 455 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 18 | 455 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172894.1 | 0 | 1 | 455 | 5 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_178375.1 | 0 | 1 | 455 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-21 | 170 | 368 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 2e-16 | 213 | 446 | 114 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 2e-16 | 213 | 446 | 114 | 358 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |