Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 484521 |
Family | GT92 |
Protein Properties | Length: 918 Molecular Weight: 104289 Isoelectric Point: 9.8791 |
Chromosome | Chromosome/Scaffold: 5 Start: 3701706 End: 3705489 |
Description | zinc finger (C3HC4-type RING finger) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT92 | 278 | 488 | 2.6e-22 |
FQMCVCTMTRNAAAVLREWVMYHAGIGVQRWFIYDNNSDDDIIAEIENLERRGYNISRHFWPWIKTQEAGFSNCAIRAKSDCDWIAFIDVDEFFYIPSGE SLTSVIKNYTSSDSIGEIRTPCHSFGPSGLRSRPRDGVTAGYTCRVVLPERHKSIIRPEAMNATLINVVHHFHLRDGFTFADMDKDIMVINHYKYQVWEV FKEKFYRRVAT |
Full Sequence |
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Protein Sequence Length: 918 Download |
MKVRRKLSGG CGGDVVVSWR TFFWFVILFV FSFVLFSTMF IFKGKFRPVV RSTISFSTAV 60 TARAVLGESI SSSPAVTIRE AVKLPEQTLV FLKYPQSLRL FTKNDLICVF SGSSKLRKVY 120 PTAVDRDKFG GQIVRCPETP RGYTISLAVS RWTTDDHLPA GPTHRWDWLV YDAVIDYDNS 180 TVVFVKGLNL RPGRVADVSR YECVYGWDFA KHNRLIRSDV ISAAQEIVRC RTPLAVLDGP 240 KSARGPVKVS VRIKGGTGML PSIAQPVRII NPPRKKPFQM CVCTMTRNAA AVLREWVMYH 300 AGIGVQRWFI YDNNSDDDII AEIENLERRG YNISRHFWPW IKTQEAGFSN CAIRAKSDCD 360 WIAFIDVDEF FYIPSGESLT SVIKNYTSSD SIGEIRTPCH SFGPSGLRSR PRDGVTAGYT 420 CRVVLPERHK SIIRPEAMNA TLINVVHHFH LRDGFTFADM DKDIMVINHY KYQVWEVFKE 480 KFYRRVATYV ADWQNEENVG SRDRAPGLGT RPVEPSDWAE RFCEVNDTGL RDQVFEKFKD 540 NKTQRLMWEK AVDDNIQRMV SETPSRVTSR SRDGSNGSKE VSIAREKNGE NAEIFISPRF 600 KSAAAMAGWD EEDLIIASFV VEDTPERSSS KRRRRSNLLF KSTPPSGSSR RKQSVKQSLV 660 ALPVIDLDEV IRHEEEKSAE KKKKKREMET ETQDEKKKID KDEKNLSEQN PIPVVLPCID 720 KLRDELSCAI CLEICFEPST TTCGHSFCKK CLRSAADKCG RKCPKCRQLI GNGRYCTVNT 780 VLWNTIQLLF PKEVEAQRAA AAILKGKETP SPRNPNQRLR SRNRETALFQ ERLQREDISR 840 LLVSEERSER SERRRRSASM RLDQDRDAAL ALRLQRQEFA SAFGATTAET SSSSVSTLSL 900 ARANLRAMAS RAVRRQG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00097 | zf-C3HC4 | 2.0e-8 | 728 | 766 | 40 | + Zinc finger, C3HC4 type (RING finger). The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. | ||
smart00184 | RING | 1.0e-8 | 728 | 766 | 40 | + Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) | ||
cd00162 | RING | 2.0e-10 | 728 | 770 | 44 | + RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | ||
pfam13704 | Glyco_tranf_2_4 | 2.0e-13 | 287 | 377 | 92 | + Glycosyl transferase family 2. Members of this family of prokaryotic proteins include putative glucosyltransferases, | ||
pfam01697 | Glyco_transf_92 | 4.0e-47 | 276 | 481 | 233 | + Glycosyltransferase family 92. Members of this family act as galactosyltransferases, belonging to glycosyltransferase family 92. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues. This is supported by the inclusion of this family in the GT-A glycosyl transferase superfamily. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA95709.1 | 0 | 43 | 557 | 43 | 558 | unnamed protein product [Arabidopsis thaliana] |
EMBL | CBI17696.1 | 0 | 1 | 913 | 34 | 943 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189369.1 | 0 | 43 | 917 | 43 | 913 | zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] |
RefSeq | XP_002270991.1 | 0 | 1 | 913 | 1 | 897 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300081.1 | 0 | 1 | 912 | 1 | 904 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3l11_A | 0.000000005 | 724 | 795 | 14 | 91 | A Chain A, Crystal Structure Of The Ring Domain Of Rnf168 |
PDB | 1z6u_B | 0.00000004 | 719 | 791 | 72 | 144 | A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens] |
PDB | 1z6u_A | 0.00000004 | 719 | 791 | 72 | 144 | A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens] |
PDB | 4epo_L | 0.00000007 | 667 | 798 | 15 | 136 | C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER |
PDB | 4epo_K | 0.00000007 | 667 | 798 | 15 | 136 | C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER |