CAZyme Information

Basic Information
SpeciesArabidopsis lyrata
Cazyme ID484521
FamilyGT92
Protein PropertiesLength: 918 Molecular Weight: 104289 Isoelectric Point: 9.8791
ChromosomeChromosome/Scaffold: 5 Start: 3701706 End: 3705489
Descriptionzinc finger (C3HC4-type RING finger) family protein
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT922784882.6e-22
  FQMCVCTMTRNAAAVLREWVMYHAGIGVQRWFIYDNNSDDDIIAEIENLERRGYNISRHFWPWIKTQEAGFSNCAIRAKSDCDWIAFIDVDEFFYIPSGE
  SLTSVIKNYTSSDSIGEIRTPCHSFGPSGLRSRPRDGVTAGYTCRVVLPERHKSIIRPEAMNATLINVVHHFHLRDGFTFADMDKDIMVINHYKYQVWEV
  FKEKFYRRVAT
Full Sequence
Protein Sequence     Length: 918     Download
MKVRRKLSGG CGGDVVVSWR TFFWFVILFV FSFVLFSTMF IFKGKFRPVV RSTISFSTAV    60
TARAVLGESI SSSPAVTIRE AVKLPEQTLV FLKYPQSLRL FTKNDLICVF SGSSKLRKVY    120
PTAVDRDKFG GQIVRCPETP RGYTISLAVS RWTTDDHLPA GPTHRWDWLV YDAVIDYDNS    180
TVVFVKGLNL RPGRVADVSR YECVYGWDFA KHNRLIRSDV ISAAQEIVRC RTPLAVLDGP    240
KSARGPVKVS VRIKGGTGML PSIAQPVRII NPPRKKPFQM CVCTMTRNAA AVLREWVMYH    300
AGIGVQRWFI YDNNSDDDII AEIENLERRG YNISRHFWPW IKTQEAGFSN CAIRAKSDCD    360
WIAFIDVDEF FYIPSGESLT SVIKNYTSSD SIGEIRTPCH SFGPSGLRSR PRDGVTAGYT    420
CRVVLPERHK SIIRPEAMNA TLINVVHHFH LRDGFTFADM DKDIMVINHY KYQVWEVFKE    480
KFYRRVATYV ADWQNEENVG SRDRAPGLGT RPVEPSDWAE RFCEVNDTGL RDQVFEKFKD    540
NKTQRLMWEK AVDDNIQRMV SETPSRVTSR SRDGSNGSKE VSIAREKNGE NAEIFISPRF    600
KSAAAMAGWD EEDLIIASFV VEDTPERSSS KRRRRSNLLF KSTPPSGSSR RKQSVKQSLV    660
ALPVIDLDEV IRHEEEKSAE KKKKKREMET ETQDEKKKID KDEKNLSEQN PIPVVLPCID    720
KLRDELSCAI CLEICFEPST TTCGHSFCKK CLRSAADKCG RKCPKCRQLI GNGRYCTVNT    780
VLWNTIQLLF PKEVEAQRAA AAILKGKETP SPRNPNQRLR SRNRETALFQ ERLQREDISR    840
LLVSEERSER SERRRRSASM RLDQDRDAAL ALRLQRQEFA SAFGATTAET SSSSVSTLSL    900
ARANLRAMAS RAVRRQG* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00097zf-C3HC42.0e-872876640+
smart00184RING1.0e-872876640+
cd00162RING2.0e-1072877044+
pfam13704Glyco_tranf_2_42.0e-1328737792+
pfam01697Glyco_transf_924.0e-47276481233+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
DDBJBAA95709.104355743558unnamed protein product [Arabidopsis thaliana]
EMBLCBI17696.10191334943unnamed protein product [Vitis vinifera]
RefSeqNP_189369.104391743913zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]
RefSeqXP_002270991.1019131897PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002300081.1019121904predicted protein [Populus trichocarpa]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3l11_A0.0000000057247951491A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
PDB1z6u_B0.0000000471979172144A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
PDB1z6u_A0.0000000471979172144A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
PDB4epo_L0.0000000766779815136C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
PDB4epo_K0.0000000766779815136C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
Transmembrane Domains
StartEnd
2142
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GR4547942582465030
AV8231462192714890
BX8361221382724090
BX8361221344185510
BX836122202632821.7
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_025_00172.1Aquca_002_00375.1
Arabidopsis lyrata493908
Arabidopsis thalianaAT5G40720.1
Brachypodium distachyonBradi3g14080.1
Brassica rapaBra028472Bra025268
Carica papayaevm.model.supercontig_5.316
Citrus clementinaCiclev10030976m
Citrus sinensisorange1.1g043544morange1.1g037991m
Cucumis sativusCucsa.136130.1
Eucalyptus grandisEucgr.B03384.1
Glycine maxGlyma02g03040.1Glyma01g04515.1Glyma08g40440.1
Gossypium raimondiiGorai.009G345800.1Gorai.006G037600.1
Manihot esculentacassava4.1_034265mcassava4.1_007462m
Mimulus guttatusmgv1a001120mmgv1a003136m
Panicum virgatumPavirv00056779m
Phaseolus vulgarisPhvul.008G147000.1Phvul.002G078300.1
Ricinus communis29736.m002092
Selaginella moellendorffii102746
Sorghum bicolorSb07g002140.1
Vitis viniferaGSVIVT01003965001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny