| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 485080 |
| Family | GH3 |
| Protein Properties | Length: 597 Molecular Weight: 64933.6 Isoelectric Point: 4.7119 |
| Chromosome | Chromosome/Scaffold: 5 Start: 13038714 End: 13041589 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 87 | 248 | 4.2039e-45 |
| LASRLGIPIIYGIDAVHGNNNVYGATIFPHNIGLGATRNYLNKVVVKCDRDADLIRRIGAATALEVRASGAHWAFAPCVAALRDPRWGRSYESYSEDTDI ICELSTLVSGLQGEPPKEHPNGYPFLAGRNNVVACAKHFVGDGGTDKGINEGNTIVSYEELD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 597 Download |
| MEGSNETCVY KNQDAPVEAR VKDLLSRMTL PEKIGQMTQI ERVVTTYPVI TDYFIGSVLN 60 GGGSWPFEDA KTSDWADMID GYQNAALASR LGIPIIYGID AVHGNNNVYG ATIFPHNIGL 120 GATRNYLNKV VVKCDRDADL IRRIGAATAL EVRASGAHWA FAPCVAALRD PRWGRSYESY 180 SEDTDIICEL STLVSGLQGE PPKEHPNGYP FLAGRNNVVA CAKHFVGDGG TDKGINEGNT 240 IVSYEELDSS CTIFELSCSG KGFVISDWEA LERLSEPFGS NYRNCVKTSV NAGVDMVMVP 300 FKYEQFIKDL TDLVESGEVT MSRIDDAVER ILRVKFVAGL FEHPLTDRSL LGTVGCKEHR 360 ELARESVRKS LVLLKNRKNS EKPFLPLDRN AKRILVTGTH ADDLGYQCGG WTKAWFGLSG 420 RITIGTTLLD AIKAAVGDKT EVIYEKTPSE ETLASVQGFS YAIVAVGETP YAETLGDNSE 480 LTIPLNGNDI VTAVAEKIPT LVVLFSGRPM VLEPPVLEKA EALVAAWLPG TEGQGISGVI 540 FGDYDFEGKL PVSWFKRVDQ LPLTADANSY DPLFPLGFGL NYNSGENSKP VLTSPA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 1.0e-29 | 12 | 582 | 671 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 7.0e-53 | 371 | 582 | 229 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 6.0e-59 | 29 | 334 | 345 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| COG1472 | BglX | 9.0e-64 | 28 | 436 | 458 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| PRK15098 | PRK15098 | 3.0e-72 | 12 | 595 | 697 | + beta-D-glucoside glucohydrolase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY25449.1 | 0 | 28 | 585 | 1 | 581 | At3g47010 [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 7 | 591 | 7 | 608 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190285.3 | 0 | 2 | 585 | 3 | 609 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_190288.1 | 0 | 1 | 587 | 1 | 635 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190289.1 | 0 | 1 | 591 | 1 | 612 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 9 | 584 | 4 | 601 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1x38_A | 0 | 9 | 584 | 4 | 601 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1lq2_A | 0 | 9 | 584 | 4 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 9 | 584 | 4 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 9 | 584 | 4 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX134175 | 296 | 290 | 585 | 0 |
| ES901611 | 273 | 262 | 534 | 0 |
| HO795479 | 324 | 261 | 583 | 0 |
| EW737295 | 258 | 330 | 587 | 0 |
| DY265467 | 327 | 148 | 439 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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