| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 485082 |
| Family | GH3 |
| Protein Properties | Length: 614 Molecular Weight: 67380.9 Isoelectric Point: 5.3353 |
| Chromosome | Chromosome/Scaffold: 5 Start: 13043300 End: 13046221 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 88 | 323 | 0 |
| LESRLGIPIIYGIDAIHGNNDVYGATIFPHNIGLGATRDADLVKRIGAATALEVRASGVHWSFAPCVAVVKDPRWGRCYESYGEVAPIVSEMTSLVSGLQ GEPSKEHTSGYPFHAGRKNVVACAKHFVGDGGTDKAINEGNTILRYEDLERKHIAPYKKCISQGVSTVMVSYSSWNGDKLHSHYFLLTEVLKQKLGFRGY IVSDWEGLDRLSDPPGSNYRNCVKMGINAGIDMVMV | |||
| Full Sequence |
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| Protein Sequence Length: 614 Download |
| MVDNEKSSCV YKNRDAPVEA RVKDLLSRMT LPEKIGQMTL IERSVASEAV IRDFSIGSVL 60 NAAGSWPFED AKSSNWADMI DGFQRSALES RLGIPIIYGI DAIHGNNDVY GATIFPHNIG 120 LGATRDADLV KRIGAATALE VRASGVHWSF APCVAVVKDP RWGRCYESYG EVAPIVSEMT 180 SLVSGLQGEP SKEHTSGYPF HAGRKNVVAC AKHFVGDGGT DKAINEGNTI LRYEDLERKH 240 IAPYKKCISQ GVSTVMVSYS SWNGDKLHSH YFLLTEVLKQ KLGFRGYIVS DWEGLDRLSD 300 PPGSNYRNCV KMGINAGIDM VMVPFKYEKF INDLIDLVES GEVLMARVDD AVERILRVKF 360 VAGLFEFPLT DRSLLPTVGC KEHRELAREA VRKSLVLLKN GKYGEFLPLN CNAERILVVG 420 THADDLGYQC GGWTKTMYGQ SGRITDGTTL LDAIKAAVGD KTEVIYEKNP SEETLASGYR 480 FSYAIVAVGE SPYVETMGDN SELTIPFNGS EIITAVAEKI PTLVILFSGR PMVLEPQVLE 540 KAEALVAAWL PGTEGQGIAD VIFGDYEFRG KLPASWFKRV DQLPLDIESN GYLPLFPLGF 600 GLNRDSAENS KMV* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 5.0e-41 | 13 | 577 | 615 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 3.0e-48 | 395 | 584 | 203 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-80 | 30 | 358 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 6.0e-84 | 19 | 584 | 632 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 2.0e-84 | 29 | 463 | 445 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY25449.1 | 0 | 29 | 605 | 1 | 579 | At3g47010 [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 5 | 603 | 4 | 604 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190285.3 | 0 | 1 | 605 | 1 | 607 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_190288.1 | 0 | 2 | 609 | 1 | 635 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190289.1 | 0 | 1 | 613 | 1 | 612 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1j8v_A | 0 | 10 | 608 | 4 | 603 | A Chain A, Archaeal Exosome Core |
| PDB | 1iex_A | 0 | 10 | 608 | 4 | 603 | A Chain A, Archaeal Exosome Core |
| PDB | 1iew_A | 0 | 10 | 608 | 4 | 603 | A Chain A, Archaeal Exosome Core |
| PDB | 1iev_A | 0 | 10 | 608 | 4 | 603 | A Chain A, Archaeal Exosome Core |
| PDB | 1ieq_A | 0 | 10 | 608 | 4 | 603 | A Chain A, Archaeal Exosome Core |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX132989 | 299 | 57 | 355 | 0 |
| HO784016 | 429 | 57 | 482 | 0 |
| DY265467 | 356 | 137 | 488 | 0 |
| EX134175 | 281 | 314 | 592 | 0 |
| HO784016 | 47 | 11 | 57 | 0.00009 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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