| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 485118 |
| Family | GH19 |
| Protein Properties | Length: 214 Molecular Weight: 22938 Isoelectric Point: 8.993 |
| Chromosome | Chromosome/Scaffold: 5 Start: 13278537 End: 13279657 |
| Description | Chitinase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH19 | 30 | 213 | 0 |
| VSSIVTQGFFNNIINQAGNGCTRKRLYTRDSFIDAANSFPNFASSVTRREIATMFAHVTHETGHFCYIEETKKKSRGRCDENVEQKPCPSPRKGHSGRGQ SLGLDLLSQPELVGSNPTVAFTKGLSFWINSVRPVLNQGFGATIRAINGMECNGGNSGAVNARIGYYRDYCRQLGVDPGPNLSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 214 Download |
| MAFTKIVSVI FLCLLGPCIG VGTTSSGGSV SSIVTQGFFN NIINQAGNGC TRKRLYTRDS 60 FIDAANSFPN FASSVTRREI ATMFAHVTHE TGHFCYIEET KKKSRGRCDE NVEQKPCPSP 120 RKGHSGRGQS LGLDLLSQPE LVGSNPTVAF TKGLSFWINS VRPVLNQGFG ATIRAINGME 180 CNGGNSGAVN ARIGYYRDYC RQLGVDPGPN LSC* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00182 | Glyco_hydro_19 | 9.0e-65 | 36 | 213 | 230 | + Chitinase class I. | ||
| cd00325 | chitinase_glyco_hydro_19 | 9.0e-66 | 36 | 213 | 229 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004568 | chitinase activity |
| GO:0006032 | chitin catabolic process |
| GO:0016998 | cell wall macromolecule catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC43319.1 | 0 | 1 | 207 | 1 | 208 | putative endochitinase [Arabidopsis thaliana] |
| DDBJ | BAF35569.1 | 0 | 30 | 213 | 72 | 268 | chitinase [Brassica rapa subsp. pekinensis] |
| RefSeq | NP_181887.1 | 0 | 13 | 213 | 52 | 264 | chitinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_190338.1 | 0 | 1 | 213 | 1 | 214 | chitinase, putative [Arabidopsis thaliana] |
| Swiss-Prot | Q06209 | 0 | 30 | 213 | 72 | 268 | CHI4_BRANA RecName: Full=Basic endochitinase CHB4; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hbh_A | 2.8026e-45 | 29 | 213 | 1 | 204 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
| PDB | 3hbe_X | 2.8026e-45 | 29 | 213 | 1 | 204 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
| PDB | 3hbd_A | 2.8026e-45 | 29 | 213 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 2dbt_C | 4e-30 | 33 | 213 | 63 | 265 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 2dbt_B | 4e-30 | 33 | 213 | 63 | 265 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
