y
Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 485694 |
Family | PL1 |
Protein Properties | Length: 485 Molecular Weight: 53658.4 Isoelectric Point: 6.2257 |
Chromosome | Chromosome/Scaffold: 5 Start: 16466766 End: 16470626 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 142 | 340 | 0 |
IVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSRC KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTA |
Full Sequence |
---|
Protein Sequence Length: 485 Download |
MLQRSCIVLL FSLFLFTPQM GFSVLNRTVL LIPHPDPELV AYEVQWKVNA SITRRQALDT 60 TDQAGSNPCF TGNPIDDCWK CDPNWPNNRQ GLADCGIGFG QYALGGKGGQ FYFVTDSSDD 120 DAVDPKPGTL RYGVIQEEPL WIVFPSNMMI KLKQELIFNS YKTLDGRGAN VHIVGGGCIT 180 LQYVSNIIIH NIHIHHCYQS GNTNVRSSPT HYGFRTKSDG DGISIFGSKD IWIDHCSLSR 240 CKDGLIDAVM GSTGITISNN FFSHHNEVML LGHSDHYEPD SGMQVTIAFN HFGEKLIQRM 300 PRCRRGYIHV VNNDFTQWEM YAIGGSGNPT INSQGNRYTA PTNPFAKEVT KRVETPDGDW 360 KGWNWRSEGD ILVNGAFFVA SGEGAEMRYE KAYSVEPKSA SFITQITFHS GVLGVGGRNN 420 NLGMWTTTGS EGNSGLDSYN DYTDEMSAAG STNRLSFSVL VLAFMLSSIS YLAMFTSSTQ 480 MFML* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-21 | 82 | 353 | 286 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-61 | 153 | 338 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-71 | 147 | 341 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 484 | 1 | 482 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 20 | 484 | 1 | 463 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 484 | 2 | 483 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 430 | 115 | 540 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 21 | 484 | 20 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 73 | 413 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 73 | 413 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-20 | 104 | 338 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.0000000000001 | 151 | 411 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.0000000000001 | 151 | 411 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |