| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 485844 |
| Family | GH2 |
| Protein Properties | Length: 1108 Molecular Weight: 125680 Isoelectric Point: 5.787 |
| Chromosome | Chromosome/Scaffold: 5 Start: 17013865 End: 17022452 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH2 | 87 | 973 | 0 |
| VKSLSGYWKFFLAPKPANVPDKFYDPAFPDSDWNALPVPSNWQCHGFDRPIYTNVVYPFPNDPPHVPEDNPTGCYRTYFQIPKEWKDRRILLHFEAVDSA FFAWINGNPVGYSQDSRLPAEFEISDYCYPWDSGKQNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPKVFIADYFFKSKLADDFSYADIQVEVK IDNMQESSKHLVLSNFIIEAAVFDTKNWYNSEGFNCELSPKVAHLKLNPSPSPTLGFHGYLLEGKLDSPNLWSAEQPNVYILVLTLKDTSGKVLDSESSI VGIRQVSKAFKQLLVNGHPVVIKGVNRHEHHPRVGKTNIEACMVKDLIMMKEYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDLSGHLKHP AKEPSWAAAMLDRVVGMVERDKNHTCIISWSLGNEAGYGPNHSAMAGWIREKDPSRLVHYEGGGSRTSSTDIVCPMYMRVWDIIKIALDQNESRPLILCE YQHAMGNSNGNIDEYWDAIDNTFGLQGGFIWDWVDQGLLKLGSDGIKRWAYGGDFGDQPNDLNFCLNGLIWPDRTPHPALHEVKHCYQPIKVSLTDGLIK VANTYFFHTTEELEFSWKIHGDGLELGSGTLSIPVIKPQNSFEIEWKSGPWFSFWNDSNAGELFLTINAKLLNPTRSLEAGHLLSSTQIPLPAKRQIIPQ AIKKTDTIITCETVGDFIKISQQDSWELMINVRKGAIEGWKIQGVLLMKEDILPCFWRAPTDNDKGGGDSSYFLRWKAAQLDNVEFLVESCSVKSITDKA VEIEFIYLGSSASVSSKTDALFKVNVTYLIYGSGDIITNWSVEPNSDLPPLPRVGIEFHIEKTLDRVEWYGKGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1108 Download |
| MVSLATQMII PSENGYRVWE DQTLFKWRKR DPHVTLRCHE SVQGALRYWY QRNNVDLTVS 60 RSAVWNDDAV QAALDSAAFW VDGLPFVKSL SGYWKFFLAP KPANVPDKFY DPAFPDSDWN 120 ALPVPSNWQC HGFDRPIYTN VVYPFPNDPP HVPEDNPTGC YRTYFQIPKE WKDRRILLHF 180 EAVDSAFFAW INGNPVGYSQ DSRLPAEFEI SDYCYPWDSG KQNVLAVQVF RWSDGSYLED 240 QDHWWLSGIH RDVLLLAKPK VFIADYFFKS KLADDFSYAD IQVEVKIDNM QESSKHLVLS 300 NFIIEAAVFD TKNWYNSEGF NCELSPKVAH LKLNPSPSPT LGFHGYLLEG KLDSPNLWSA 360 EQPNVYILVL TLKDTSGKVL DSESSIVGIR QVSKAFKQLL VNGHPVVIKG VNRHEHHPRV 420 GKTNIEACMV KDLIMMKEYN INAVRNSHYP QHPRWYELCD LFGMYMIDEA NIETHGFDLS 480 GHLKHPAKEP SWAAAMLDRV VGMVERDKNH TCIISWSLGN EAGYGPNHSA MAGWIREKDP 540 SRLVHYEGGG SRTSSTDIVC PMYMRVWDII KIALDQNESR PLILCEYQHA MGNSNGNIDE 600 YWDAIDNTFG LQGGFIWDWV DQGLLKLGSD GIKRWAYGGD FGDQPNDLNF CLNGLIWPDR 660 TPHPALHEVK HCYQPIKVSL TDGLIKVANT YFFHTTEELE FSWKIHGDGL ELGSGTLSIP 720 VIKPQNSFEI EWKSGPWFSF WNDSNAGELF LTINAKLLNP TRSLEAGHLL SSTQIPLPAK 780 RQIIPQAIKK TDTIITCETV GDFIKISQQD SWELMINVRK GAIEGWKIQG VLLMKEDILP 840 CFWRAPTDND KGGGDSSYFL RWKAAQLDNV EFLVESCSVK SITDKAVEIE FIYLGSSASV 900 SSKTDALFKV NVTYLIYGSG DIITNWSVEP NSDLPPLPRV GIEFHIEKTL DRVEWYGKGP 960 FECYPDRKAA AHVAIYEHNV GDMHVPYIVP GESGGRTDVR WVTFRNKDGV GIYASTYGNS 1020 SPMQMNASYY TTGELNRATH EEDLIKGQNI EVHLDHKHMG LGGDDSWTPC VHDKYLIPPK 1080 PYSFSLRLCP ITASTSVLDI YKDQLPC* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 1.0e-97 | 810 | 1088 | 280 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 3.0e-112 | 397 | 677 | 291 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 2.0e-150 | 87 | 971 | 890 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 17 | 1090 | 1122 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 50 | 1093 | 1055 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB77564.1 | 0 | 1 | 1107 | 1 | 1075 | beta Galactosidase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001030858.1 | 0 | 1 | 1107 | 1 | 1108 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | NP_680128.1 | 0 | 1 | 1107 | 1 | 1107 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002299206.1 | 0 | 1 | 1106 | 1 | 1109 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513059.1 | 0 | 1 | 1104 | 1 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1jz2_D | 0 | 87 | 1089 | 51 | 1021 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1jz2_C | 0 | 87 | 1089 | 51 | 1021 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1jz2_B | 0 | 87 | 1089 | 51 | 1021 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1jz2_A | 0 | 87 | 1089 | 51 | 1021 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1jz1_P | 0 | 87 | 1089 | 51 | 1021 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO804274 | 385 | 129 | 510 | 0 |
| DK499562 | 275 | 244 | 518 | 0 |
| DK497367 | 260 | 1 | 260 | 0 |
| DK502071 | 256 | 1 | 256 | 0 |
| HO804274 | 47 | 504 | 549 | 0.000000007 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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