Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 485907 |
Family | PL1 |
Protein Properties | Length: 491 Molecular Weight: 53141.3 Isoelectric Point: 6.2244 |
Chromosome | Chromosome/Scaffold: 5 Start: 17235749 End: 17239228 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 144 | 334 | 0 |
WIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDGDGISIFGSQKIWVDHCSMSHCTDGLIDAV MGSTAITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYAA |
Full Sequence |
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Protein Sequence Length: 491 Download |
MLLPNFSNTI FLLCFLFTLI AATKPLNLTL PHQHPSPDSV ALHVIRSVNE SLARRQLGSS 60 SSSSSSSSSS CRTGNPIDDC WKCSDSDWSS NRQRLADCSI GFGHGTLGGK NGKIYVVTDS 120 SDNNPTNPTP GTLRYGVIQE EPLWIVFSSN MLIRLKQELI INSYKTLDGR GSAVHITGNG 180 CLTLQYVQHI IIHNLHIYDC KPSAGFEKRG RSDGDGISIF GSQKIWVDHC SMSHCTDGLI 240 DAVMGSTAIT ISNNYFTHHD EVMLLGHDDN YAPDTGMQVT IAFNHFGQGL VQRMPRCRRG 300 YIHVVNNDFT EWKMYAIGGS GNPTINSQGN RYAAPSDPSA KEVTKRVDSK DDGEWANWNW 360 RTEGDLMENG AFFVASGEGM SSMYSKASSV DPKAASLVDQ LTRNAGVFGG PRDDQGQSGN 420 SYSPYGGDGG GGMDDMGGMS GTTRGSSSSG DDSNVFQMIF GSDAPSQPRL TLLFSLLMIS 480 VLSLSTLFLW * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-26 | 105 | 330 | 238 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-65 | 156 | 332 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-80 | 150 | 336 | 198 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 1 | 489 | 1 | 499 | pectate lyase-like protein [Brassica napus] |
EMBL | CAB41092.1 | 0 | 1 | 488 | 1 | 497 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_191052.2 | 0 | 1 | 479 | 1 | 491 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 20 | 462 | 20 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 412 | 1 | 415 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 75 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 75 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-20 | 95 | 332 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 159 | 309 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3krg_A | 0.00000000000008 | 150 | 344 | 116 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |