| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 48595.m000013 |
| Family | GH28 |
| Protein Properties | Length: 228 Molecular Weight: 23911.1 Isoelectric Point: 8.777 |
| Chromosome | Chromosome/Scaffold: 48595 Start: 91 End: 775 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 89 | 226 | 8.8e-23 |
| AGFVTGPLTLADGVTLVIDRDATLYASTNPALFDRGAGTCGTNDQSGKGCSPLITVKGGDGGGIMGEGVIDGQGGHLIDGKTESWWQIARRAQKENSRQN VPRLIVVDRARDFTLYRITLRNSPNFHVSTNGVDGFTA | |||
| Full Sequence |
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| Protein Sequence Length: 228 Download |
| MLTRPGAARP HRPSRMPLAA SITLACALAP FAHAQDTRDV REPVIPTACA VLHASPAEAG 60 QDDTKRIQSA IKACPPGRAL HLAPKDGAAG FVTGPLTLAD GVTLVIDRDA TLYASTNPAL 120 FDRGAGTCGT NDQSGKGCSP LITVKGGDGG GIMGEGVIDG QGGHLIDGKT ESWWQIARRA 180 QKENSRQNVP RLIVVDRARD FTLYRITLRN SPNFHVSTNG VDGFTALG |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-7 | 164 | 226 | 63 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-7 | 55 | 222 | 188 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0 | 36 | 226 | 2 | 187 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Signal Peptide |
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| Cleavage Site |
| 34 |
| Hydropathy |
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