Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 486197 |
Family | GH28 |
Protein Properties | Length: 432 Molecular Weight: 46531.5 Isoelectric Point: 8.0835 |
Chromosome | Chromosome/Scaffold: 5 Start: 18440343 End: 18443062 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 419 | 0 |
KKACSTNGVTTFLIPKGKTYLLKSTRFRGPCKSLRNFQILGTLSASTKRSDYKDKNHWLILEDVNNLSIDGGSTGIINGNGKIWWQNSCKIDKSKPCTKA PTALTLYNLKNLNVKNLRVRNAQQIQISIEKCNKVEVSNVVITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISI GSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQNYCDKDKCEEQGSAVQVKNVVYKNISGTSATDVAITLN CSEKYPCQGIVLENVNIKGGTASCKNAN |
Full Sequence |
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Protein Sequence Length: 432 Download |
MARCCRLLAV FLCVLLMLSL CEALSSNVDD GYGHEDGSFE SDSLIKLNND DVLSLKSSDE 60 TTLESSTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV TTFLIPKGKT YLLKSTRFRG 120 PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKIWWQNSC 180 KIDKSKPCTK APTALTLYNL KNLNVKNLRV RNAQQIQISI EKCNKVEVSN VVITAPGDSP 240 NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK 300 AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQNYCDKDK 360 CEEQGSAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG IVLENVNIKG GTASCKNANV 420 KNQGTVSPKC S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-83 | 73 | 427 | 365 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-98 | 72 | 429 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-104 | 95 | 421 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-120 | 72 | 428 | 365 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 26 | 431 | 406 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA65072.1 | 0 | 1 | 430 | 1 | 432 | polygalacturonase [Brassica napus] |
EMBL | CAA90272.1 | 0 | 1 | 430 | 1 | 432 | Polygalacturonase [Brassica napus] |
EMBL | CAC05657.1 | 0 | 1 | 430 | 1 | 431 | endopolygalacturonase [Brassica napus] |
EMBL | CAD21651.2 | 0 | 1 | 430 | 1 | 432 | endo polygalacturonase [Brassica rapa subsp. rapa] |
RefSeq | NP_191310.1 | 0 | 1 | 431 | 1 | 431 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-24 | 81 | 420 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-24 | 81 | 420 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-24 | 81 | 420 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-24 | 81 | 420 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-24 | 81 | 420 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |