y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 486213 |
Family | GT47 |
Protein Properties | Length: 793 Molecular Weight: 90828.5 Isoelectric Point: 6.3412 |
Chromosome | Chromosome/Scaffold: 5 Start: 18490442 End: 18494994 |
Description | exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 344 | 697 | 0 |
KKRPLIYIYDLPPDFNSLLIEGRHFKLECVNRIYDERNATVWTDYLYGSQMAFYENILATAHRTLNGEEADFFFVPVLDSCIINRADDAPHINMQNHTGL RSSFTLEFYKRAYEHIVEKYPYWNRSAGRDHIWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWGDNWDDISDERRGDHPCFDPRKDLVIPA WKVPDPYSMRANYWARPREKRKTLFYFNGNLGPAYEKGRPEDSYSMGIRQKLAEEFGSSPNKEGKLGKQHAEDVIVTPLRSDNYHKDIANSIFCGAFPGD GWSGRMEDSILQGCVPVIIQDGIYLPYENMLNYESFAVRVSEDDIPNLINTLRG |
Full Sequence |
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Protein Sequence Length: 793 Download |
MFSHQKWKFS WSQIATVASV IVLVSLVHLF LGPVVPSFDS IIVRQAQNLS GPTNESITQV 60 TKDLSQSLVV AFDRRFPADS HGAVVYRNAS WKAEIGQWLS SCDAVAKEVD VIEPIGGRKC 120 MNDCSGQGVC NYEFGLCRCF HGFTGDDCSQ KLHLDCNYEK TPEMPYGKWV VSICSRHCDT 180 TRAMCFCGEG TKYPNRPVPE SCGFQINSPA NPDEPKMTDW SKPDLDILTT NSSKQGWCNV 240 DPEDAYALKV QIKEECDCKY DCLWGRFCEI PVQCTCVNQC SGHGKCRGGF CQCDKGWFGT 300 DCSTPSTLST VGEWPQWLRP AHLEVPSEKN VPGNLTNLSA VVKKKRPLIY IYDLPPDFNS 360 LLIEGRHFKL ECVNRIYDER NATVWTDYLY GSQMAFYENI LATAHRTLNG EEADFFFVPV 420 LDSCIINRAD DAPHINMQNH TGLRSSFTLE FYKRAYEHIV EKYPYWNRSA GRDHIWFFSW 480 DEGACYAPKE IWNSMMLVHW GNTNSKHNHS TTAYWGDNWD DISDERRGDH PCFDPRKDLV 540 IPAWKVPDPY SMRANYWARP REKRKTLFYF NGNLGPAYEK GRPEDSYSMG IRQKLAEEFG 600 SSPNKEGKLG KQHAEDVIVT PLRSDNYHKD IANSIFCGAF PGDGWSGRME DSILQGCVPV 660 IIQDGIYLPY ENMLNYESFA VRVSEDDIPN LINTLRGFSE TEIQFRLANV KKLWQRFLFR 720 DSILLEAERQ KASYGHEEEW AVQFSKLKHD DIFATFIQTL HFKLHNDPWR REQVVNRTKD 780 YGLPQECLHK TN* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07974 | EGF_2 | 0.005 | 120 | 148 | 31 | + EGF-like domain. This family contains EGF domains found in a variety of extracellular proteins. | ||
pfam07974 | EGF_2 | 7.0e-5 | 274 | 302 | 31 | + EGF-like domain. This family contains EGF domains found in a variety of extracellular proteins. | ||
pfam03016 | Exostosin | 3.0e-66 | 343 | 698 | 359 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB41192.1 | 0 | 1 | 792 | 1 | 736 | putative protein [Arabidopsis thaliana] |
EMBL | CBI29877.1 | 0 | 2 | 791 | 31 | 821 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_191322.3 | 0 | 1 | 792 | 1 | 793 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | NP_974452.1 | 0 | 1 | 792 | 1 | 791 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002277596.1 | 0 | 2 | 791 | 3 | 793 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3a7q_A | 0.004 | 276 | 330 | 537 | 586 | B Chain B, Structural Basis For Specific Recognition Of Reelin By Its Receptors |
PDB | 2e26_A | 0.004 | 276 | 330 | 537 | 586 | A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin |