Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 486450 |
Family | GH28 |
Protein Properties | Length: 389 Molecular Weight: 41194.9 Isoelectric Point: 9.09 |
Chromosome | Chromosome/Scaffold: 5 Start: 19550977 End: 19555968 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 374 | 0 |
AKACASVKPVTILVPKGRFFLRSIIFDGAKCKRKSVTFRIQGTLVAPSDYRIIGKENYWILFQHLDGLSVYGGVLDAQGTSLWSCKKSGKNCPSGATSIG FQSSSNVVISGLTSLNSQMFHVAINGCRNVKLEGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK ESVEAGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSS KKPCTGIRIQDVKLTYRNKPATTDCSHA |
Full Sequence |
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Protein Sequence Length: 389 Download |
MPSSLLTVLL FLLSIPSSSA QTYNILSYGA KPDGKTDSTK ALTAVWAKAC ASVKPVTILV 60 PKGRFFLRSI IFDGAKCKRK SVTFRIQGTL VAPSDYRIIG KENYWILFQH LDGLSVYGGV 120 LDAQGTSLWS CKKSGKNCPS GATSIGFQSS SNVVISGLTS LNSQMFHVAI NGCRNVKLEG 180 VKVSADGNSP NTDGIHVQSS STVSILNSKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS 240 IGSLGKESVE AGVQNITVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQH CVMNNVQNPI 300 VIDQNYCPGN ENCPNQVSGI KISDVMFFDI HGTSATEVGV KLDCSSKKPC TGIRIQDVKL 360 TYRNKPATTD CSHAGGSEAG FQRPNSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-86 | 22 | 384 | 373 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 50 | 368 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-91 | 18 | 388 | 378 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-111 | 18 | 387 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-143 | 18 | 388 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28534.1 | 0 | 3 | 388 | 2 | 384 | unknown [Arabidopsis thaliana] |
EMBL | CAB75804.1 | 0 | 20 | 388 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_181915.1 | 0 | 3 | 388 | 2 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_191544.2 | 0 | 20 | 388 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002529090.1 | 0 | 4 | 388 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 116 | 361 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 6e-17 | 109 | 371 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-17 | 109 | 371 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.000000000000004 | 148 | 333 | 110 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.000000000000004 | 148 | 333 | 110 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |