y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 487211 |
Family | PL1 |
Protein Properties | Length: 520 Molecular Weight: 56251.1 Isoelectric Point: 7.0287 |
Chromosome | Chromosome/Scaffold: 6 Start: 1416543 End: 1420950 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 162 | 365 | 0 |
PEPLWIVFSSDMGIKLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWVDHC SLGYCADGLIDVILASTAVTISNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPTINSQGN RYTA |
Full Sequence |
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Protein Sequence Length: 520 Download |
MVAHERIHNL QKPTCICIIW FCLLVSLSHH GRASSSSLSS SSSIFNLSLP HQHPFPEHVV 60 LNVQRKLNDS LSRRQLLTYQ QDDGTTASSP IPSCITGNPI DDCWRCDPNW SENRQRLADC 120 SIGFGQGTLG GKGGRFYLVT DSSDNDAAYP IPGTLRHAVI QPEPLWIVFS SDMGIKLKHE 180 LIIGSYKTID GRGTNIQITG HGCLTIQQVS HVIIHNVHIH HCKPSGNTLV ASSPTHVGFR 240 GVSDGDGISV SASHHIWVDH CSLGYCADGL IDVILASTAV TISNNYFSHH DEVMLLGHDD 300 RYTADKGMQV TIAFNHFGEG LVQRMPRCRH GYIHVVNNDF TAWEMYAIGG SASPTINSQG 360 NRYTAPIDPN AKEVTKRVDS NEKHWSGWNW RTEGDVMVNG AFFVPSGDGV SPAYARATSV 420 QPKAAAIIDQ LTVNAGVFGD PSGRNGQGGS FPGITDGGGT ITRGYSKSGP GGSSGDSDDG 480 LFTVIFGNNS GAVALRPGQV WSILLIIIIL FWYIPHHTR* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-23 | 167 | 381 | 237 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-58 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-64 | 172 | 367 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 437 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 437 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-20 | 117 | 363 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 181 | 383 | 128 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 5e-16 | 176 | 436 | 78 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |