| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 487468 |
| Family | AA7 |
| Protein Properties | Length: 567 Molecular Weight: 62142.5 Isoelectric Point: 6.9699 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2480377 End: 2485653 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA7 | 143 | 338 | 4.4e-26 |
| NIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKGGVCIDMSLMKRVKALHVEDMDVVVEPGIGWLELNEYLEEYGLFFPLDPGPGAS IGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLMIGSEGTLGVITEITLRLQKIPQHSVVAVCNFPTVKDAADV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 567 Download |
| MAFSSRFARS KAVLSFFRPC RQLHSTPKST ADVTVISPVK GRRRLPTWWS SSLLPLAIAA 60 SATSFAYLNL SHPSISESSA LDSRDITVGG KGSTEAVVKG EYKEVPKELI SQLKTILEDN 120 LTTDHDERYF HGKPQNSFHK AVNIPDVVVF PRSEEEVSKI LKSCNEYKVP IVPYGGATSI 180 EGHTLAPKGG VCIDMSLMKR VKALHVEDMD VVVEPGIGWL ELNEYLEEYG LFFPLDPGPG 240 ASIGGMCATR CSGSLAVRYG TMRDNVISLK VVLPNGDVVK TASRARKSAA GYDLTRLMIG 300 SEGTLGVITE ITLRLQKIPQ HSVVAVCNFP TVKDAADVAI ATMMSGIQVS RVELLDEVQI 360 RAINMANGKN LTEAPTLMFE FIGTEAYTRE QTQIVQQIAS KHNGSDFMFA EEPEAKKELW 420 KIRKEALWAC YAMAPGHEAM ITDVCVPLSH LAELISRSKK ELDASSLLCT VIAHAGDGNF 480 HTCIMFDPSN EDQRREAERL NHFMVHSALS MDGTCTGEHG VGTGKMKYLE KELGIEALQT 540 MKRIKKTLDP NDIMNPGKLI PPHVCF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 4.0e-46 | 144 | 565 | 428 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 4.0e-74 | 318 | 559 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 6.0e-90 | 148 | 558 | 415 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 3.0e-116 | 112 | 562 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 9 | 566 | 558 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 1.99965e-42 | 108 | 560 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 1.99965e-42 | 108 | 560 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 1.99965e-42 | 108 | 560 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 1.99965e-42 | 108 | 560 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 1.99965e-42 | 108 | 560 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
|---|
 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |