Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 487573 |
Family | CE8 |
Protein Properties | Length: 362 Molecular Weight: 39716.3 Isoelectric Point: 9.4115 |
Chromosome | Chromosome/Scaffold: 6 Start: 2902722 End: 2904782 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 67 | 350 | 0 |
ITVNQNGGGDFKTINAAIKSIPLANKNRVIIKLAPGIYHEKVTIDIGRPFVTLLGKPGAETNLTYDGTAAKYGTVESATLIVWATNFLAANLNIINTSPM PKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHAVGDGLRVIAAHNRQSTNEQNGYSFVHCKVTG VGTGIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRVAHTQDIDNKEANQFLTLGYIK |
Full Sequence |
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Protein Sequence Length: 362 Download |
MGYISLSLVA LLVFFASPVV LADDITPIPA DRALISQWFK ANVKPFSQRR GTLDPDLEAA 60 EASRRVITVN QNGGGDFKTI NAAIKSIPLA NKNRVIIKLA PGIYHEKVTI DIGRPFVTLL 120 GKPGAETNLT YDGTAAKYGT VESATLIVWA TNFLAANLNI INTSPMPKPG TQGQALAMRI 180 NGDKAAFYNC RFYGFQDTLC DDRGNHFFKN CYIEGTYDFI FGRGASLYLT TQLHAVGDGL 240 RVIAAHNRQS TNEQNGYSFV HCKVTGVGTG IYLGRAWMSH PKVVYSYTEM SSVVNPSGWQ 300 ENRVRAHDKT VFYGEYMCTG PGSHKAKRVA HTQDIDNKEA NQFLTLGYIK GSKWLLPPPA 360 Y* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-86 | 65 | 360 | 305 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-88 | 66 | 357 | 302 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-95 | 66 | 355 | 290 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-106 | 3 | 357 | 374 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 1 | 361 | 363 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8e-37 | 67 | 355 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-35 | 69 | 355 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-18 | 57 | 286 | 26 | 276 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 8e-17 | 66 | 286 | 7 | 252 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 8e-17 | 66 | 286 | 7 | 252 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |