| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 487738 |
| Family | PL1 |
| Protein Properties | Length: 299 Molecular Weight: 33188.2 Isoelectric Point: 10.0705 |
| Chromosome | Chromosome/Scaffold: 6 Start: 3692867 End: 3694076 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 39 | 240 | 0 |
| KKWITFKRNMKIKLHKPLLISSFTALDGRGASVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIIQLGQVDGDAIRLVTAKKVWIDHNTL YDCEDGLLDVTRGTTDVTVSNNWFRNQDKVMLLGHDDGYVRDKEMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYF VA | |||
| Full Sequence |
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| Protein Sequence Length: 299 Download |
| MTGNIGKGVT QYKVTDPSDD PLNPKPGTLR YGATLVKGKK WITFKRNMKI KLHKPLLISS 60 FTALDGRGAS VHISGPACLI VYKATDVIIH GLKIHDCKAH PPSSVMGPDS KIIQLGQVDG 120 DAIRLVTAKK VWIDHNTLYD CEDGLLDVTR GTTDVTVSNN WFRNQDKVML LGHDDGYVRD 180 KEMRVTVVFN HFGPNCNQRM PRVRHGYAHV ANNYYQGWTQ YAIGGSMSPR VKSESNYFVA 240 PKSGSKEVLE KHGPITVQIK GSLLQTLRLL KNSLLQLERY TAPEIPSVRT TTTLNMTF* 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-25 | 58 | 238 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-57 | 60 | 238 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-73 | 47 | 242 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 248 | 1 | 248 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_196490.1 | 0 | 1 | 298 | 1 | 297 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002299118.1 | 0 | 1 | 260 | 32 | 292 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 253 | 32 | 284 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 248 | 60 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 6 | 253 | 35 | 284 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 6 | 253 | 35 | 284 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 7e-18 | 56 | 238 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-16 | 80 | 261 | 83 | 263 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmv_A | 2e-16 | 80 | 261 | 83 | 263 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FD757999 | 200 | 54 | 253 | 0 |
| DR808308 | 225 | 1 | 218 | 0 |
| DT575750 | 160 | 92 | 251 | 0 |
| EB425777 | 241 | 12 | 252 | 0 |
| BQ505865 | 247 | 6 | 252 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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