| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 488866 |
| Family | CE8 |
| Protein Properties | Length: 387 Molecular Weight: 42956.4 Isoelectric Point: 9.6178 |
| Chromosome | Chromosome/Scaffold: 6 Start: 8341936 End: 8344904 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 91 | 380 | 0 |
| HKKSNKGDFTKIQDAIDSLPLINFVRVVIKVHAGVYKEKVNILPMKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAVNSPFFVAKNITFK NTTPVPLPGAVGKQAVALRISADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFV KCKVTGTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWARELTDEEAKPFLSLTFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MPKFNSTQAP NLFLLLLLLL VILLCSKQTK CHTKGLRLRP RNQKNVNTTS DRTQNPEDEF 60 MKWVRFVGSL KHSVFKAAKN KLFPSYTLTV HKKSNKGDFT KIQDAIDSLP LINFVRVVIK 120 VHAGVYKEKV NILPMKAFIT IEGEGAEKTT VEWGDTAQTP DSKGNPMGTY NSASFAVNSP 180 FFVAKNITFK NTTPVPLPGA VGKQAVALRI SADNAAFFGC RMLGAQDTLY DHLGRHYYKD 240 CYIEGSVDFI FGNALSLYEG CHVHAIADKL GAVTAQGRSS VLEDTGFSFV KCKVTGTGVL 300 YLGRAWGPFS RVVFAYTYMD NIILPRGWYN WGDPSREMTV FYGQYKCTGA GANYGGRVAW 360 ARELTDEEAK PFLSLTFIDG SEWIKL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02634 | PLN02634 | 3.0e-114 | 49 | 384 | 337 | + probable pectinesterase |
| PLN02304 | PLN02304 | 6.0e-117 | 98 | 385 | 296 | + probable pectinesterase |
| PLN02432 | PLN02432 | 2.0e-117 | 93 | 385 | 293 | + putative pectinesterase |
| PLN02665 | PLN02665 | 4.0e-121 | 92 | 384 | 295 | + pectinesterase family protein |
| PLN02682 | PLN02682 | 0 | 43 | 386 | 344 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 97 | 385 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2.94273e-44 | 90 | 385 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-22 | 86 | 379 | 31 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-19 | 85 | 372 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-19 | 85 | 372 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
