Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 489729 |
Family | CBM22 |
Protein Properties | Length: 752 Molecular Weight: 84280.7 Isoelectric Point: 5.5601 |
Chromosome | Chromosome/Scaffold: 6 Start: 18102788 End: 18106154 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 27 | 162 | 1.6e-31 |
IILNPNFEDGLNNWTGRACKIVLHESMDGGKIVPLSGKVFAAATQRKDTWNGIQQEISGRFQRKRVYEVTAMVRIFGNNVTNATVQATLWVLNANQREQY IVIANVQATDKNWVELKGKFVIQGSPSRVILYLEGP | |||
CBM22 | 197 | 344 | 2.4e-39 |
NIIENSEVVNGATQPWFTLGNCKLSVGQGAPRTLPPMARDTLGPRKPLGGSYILVTNRTQTWMGPAQMITDKIKLFLTYQVSAWVKIGVGVSGSSMSPQN VNIALSVDNQWVNGGQVEATVGDTWHEIGGSFRLEKQPQNVMVYVQGP | |||
GH10 | 403 | 684 | 0 |
KQTYNSFPVGTCINRTDIDNEDFVDFFTKNFNWAVFGNELKWYSTEAERGKVNYQDADDMLDLCIGNNINVRGHCIFWEVESTVQPWVRQLNKTDLMNAV QRRLTDLLTRYKGKFKHYDVNNEMLHGSFYQDKLGKGVRALMFNIAHKLDPSPLLFVNDYHVEDGDDTRSSPEKYIKLVLDLEAQGAIVGGIGIQGHIDS PVGAIVCSALDKLSVLGRPIWFTELDVSSSNEYVRGEDLEVMLWEAFAHPAVEGIMLWGFWELSMSRENANLVEGEGEVNEA |
Full Sequence |
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Protein Sequence Length: 752 Download |
MEKNTNMNHT SDDDNDKHHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDGGKIVP 60 LSGKVFAAAT QRKDTWNGIQ QEISGRFQRK RVYEVTAMVR IFGNNVTNAT VQATLWVLNA 120 NQREQYIVIA NVQATDKNWV ELKGKFVIQG SPSRVILYLE GPPSGSDILL NSLVVKHAKR 180 NRPSPPPFYE NPGFGVNIIE NSEVVNGATQ PWFTLGNCKL SVGQGAPRTL PPMARDTLGP 240 RKPLGGSYIL VTNRTQTWMG PAQMITDKIK LFLTYQVSAW VKIGVGVSGS SMSPQNVNIA 300 LSVDNQWVNG GQVEATVGDT WHEIGGSFRL EKQPQNVMVY VQGPAAGIDL MIAGLQIFPV 360 DRRDRVRCLK RQVDQVRKRD IVLKFSGLDE DSSDLFPYIV KVKQTYNSFP VGTCINRTDI 420 DNEDFVDFFT KNFNWAVFGN ELKWYSTEAE RGKVNYQDAD DMLDLCIGNN INVRGHCIFW 480 EVESTVQPWV RQLNKTDLMN AVQRRLTDLL TRYKGKFKHY DVNNEMLHGS FYQDKLGKGV 540 RALMFNIAHK LDPSPLLFVN DYHVEDGDDT RSSPEKYIKL VLDLEAQGAI VGGIGIQGHI 600 DSPVGAIVCS ALDKLSVLGR PIWFTELDVS SSNEYVRGED LEVMLWEAFA HPAVEGIMLW 660 GFWELSMSRE NANLVEGEGE VNEAGKRFLE VKQEWLSHAY GIIDDESEFT FKGYHGTYAV 720 EVCTPAGIVL KTFVVEKGDT PLIISIDLSC L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 3.0e-15 | 196 | 346 | 157 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 3.0e-16 | 27 | 164 | 139 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 1.0e-21 | 440 | 662 | 241 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 4.0e-65 | 442 | 688 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 4.0e-78 | 401 | 692 | 313 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC42019.1 | 0 | 1 | 751 | 1 | 752 | putative xylan endohydrolase [Arabidopsis thaliana] |
RefSeq | NP_001031593.1 | 0 | 1 | 656 | 1 | 657 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_192556.2 | 0 | 1 | 751 | 1 | 752 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | XP_002301133.1 | 0 | 11 | 748 | 320 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 25 | 357 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-24 | 432 | 636 | 39 | 249 | D Chain D, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis Virus |
PDB | 1i1w_A | 2e-24 | 432 | 636 | 39 | 249 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1nq6_A | 7e-24 | 440 | 683 | 44 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2bnj_A | 1e-23 | 432 | 636 | 39 | 249 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 2e-23 | 440 | 636 | 47 | 249 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EB442796 | 305 | 225 | 529 | 0 |
GO850973 | 330 | 328 | 657 | 0 |
EX570690 | 294 | 455 | 748 | 0 |
GW865493 | 312 | 300 | 611 | 0 |
EB442796 | 116 | 60 | 175 | 0.00005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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